C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: WD repeat domain 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039535 Wdr38-003 ENSMUSG00000035295 10090 + 2:38997476-39006168 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000039535
Transcript ID Breast
ENSMUST00000039535 0.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0002 CGP 2:38931978-39006168
CIL_00075H CIL_00075H_0002 CGP 2:38997476-39006168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348462 RPL35-001 protein_coding Homo_sapiens 2e-26 122
ENST00000373570 RPL35-005 protein_coding Homo_sapiens 2e-26 122
ENST00000402419 RPL35P2-001 processed_pseudogene Homo_sapiens 1e-18 97
ENST00000433398 RPL35P5-001 processed_pseudogene Homo_sapiens 1e-22 110
ENST00000487431 RPL35-004 retained_intron Homo_sapiens 4e-26 122
ENST00000493018 RPL35-003 nonsense_mediated_decay Homo_sapiens 3e-26 122

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