C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433839 RP11-159H3.1-001 ENSG00000236762 9606 - 10:121133090-121133723 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000433839
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000433839 0.059±0.00 0.227±0.00 0.138±0.00 0.241±0.00 0.344±0.00 0.058±0.00 0.034±0.00 0.090±0.00 0.270±0.00 0.394±0.00 0.241±0.00 0.226±0.00 0.187±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MH CIL_0008MH_0001 VISTA 10:120742372-121343942
CIL_0002WI CIL_0002WI_0001 CGP 10:120851175-121598458
CIL_0007TN CIL_0007TN_0001 VISTA 10:121051688-121653399

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017548 Rpl19-001 protein_coding Mus_musculus 0 689
ENSMUST00000122422 Rpl19-ps11-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000092425 Rpl19-002 protein_coding Mus_musculus 0 682
ENSMUST00000121059 Rpl19-ps1-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000159343 Gm16238-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000121251 Rpl19-ps12-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000121130 Gm15566-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000167150 Rpl19-ps4-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000117145 Gm13216-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000134435 Rpl19-003 retained_intron Mus_musculus 2e-38 163

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