C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017548 Rpl19-001 ENSMUSG00000017404 10090 + 11:98026924-98030492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017548
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017548 309.253±121.91 103.315±11.73 765.456±39.85 310.762±162.10 209.450±64.51 277.704±80.76 146.114±23.24 255.621±36.79 432.483±345.96 221.931±16.69 209.982±19.06 409.588±127.22 511.027±330.78 89.860±31.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0000TJ CIL_0000TJ_0003 CGP 11:98001508-98030492
CIL_0006QM CIL_0006QM_0002 CGP 11:98026710-98053462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IDA structural constituent of ribosome
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IC translation
GO:0016020 IEA membrane
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225430 RPL19-001 protein_coding Homo_sapiens 0 948
ENST00000424919 RPL19P21-001 processed_pseudogene Homo_sapiens 0 726
ENST00000429272 AC068137.13-001 processed_pseudogene Homo_sapiens 0 636
ENST00000432746 RPL19P12-001 processed_pseudogene Homo_sapiens 0 747
ENST00000433839 RP11-159H3.1-001 processed_pseudogene Homo_sapiens 0 689
ENST00000472309 RP11-84H6.1-001 processed_pseudogene Homo_sapiens 0 616
ENST00000477964 RP11-889L3.1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000495884 RPL19P14-001 processed_pseudogene Homo_sapiens 0 545
ENST00000495944 RPL19P11-001 processed_pseudogene Homo_sapiens 0 599
ENST00000498753 RP11-343B5.1-001 processed_pseudogene Homo_sapiens 0 656
ENST00000577741 RPL19-004 retained_intron Homo_sapiens 0 484
ENST00000579260 RPL19-002 protein_coding Homo_sapiens 0 846
ENST00000579374 RPL19-006 protein_coding Homo_sapiens 0 869
ENST00000580333 RPL19-005 retained_intron Homo_sapiens 0 407
ENST00000582193 RPL19-003 protein_coding Homo_sapiens 0 859
ENST00000585199 RPL19-007 protein_coding Homo_sapiens 0 436

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