C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prospero homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435016 PROX1-002 ENSG00000117707 9606 + 1:213988517-214036423 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLungOvaryTestisENST00000435016
Transcript ID Bladder Heart Kidney Lung Ovary Testis
ENST00000435016 0.607±0.00 1.072±0.00 14.555±0.00 0.355±0.00 4.269±0.00 2.955±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J3 CIL_0007J3_0001 UCNEbase 1:213159436-214186583
CIL_00089Q CIL_00089Q_0001 VISTA 1:213807252-214408737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001822 IEP kidney development
GO:0001889 IEP liver development
GO:0001938 IDA positive regulation of endothelial cell proliferation
GO:0001946 IDA lymphangiogenesis
GO:0002088 IEP lens development in camera-type eye
GO:0003677 IMP:IEA DNA binding
GO:0003700 IC sequence-specific DNA binding transcription factor activity
GO:0003705 ISS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007420 IEP brain development
GO:0008284 IDA positive regulation of cell proliferation
GO:0008285 IMP negative regulation of cell proliferation
GO:0010468 IDA regulation of gene expression
GO:0010595 IDA positive regulation of endothelial cell migration
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0021516 ISS dorsal spinal cord development
GO:0021542 ISS dentate gyrus development
GO:0021707 ISS cerebellar granule cell differentiation
GO:0021915 ISS neural tube development
GO:0030240 ISS skeletal muscle thin filament assembly
GO:0030324 IEP lung development
GO:0030910 ISS olfactory placode formation
GO:0031016 IEP pancreas development
GO:0042752 IMP regulation of circadian rhythm
GO:0043049 ISS otic placode formation
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045071 IDA negative regulation of viral genome replication
GO:0045737 IDA positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045787 ISS positive regulation of cell cycle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046619 ISS optic placode formation involved in camera-type eye formation
GO:0048845 ISS venous blood vessel morphogenesis
GO:0050692 IPI DBD domain binding
GO:0050693 IPI LBD domain binding
GO:0055005 ISS ventricular cardiac myofibril assembly
GO:0055009 ISS atrial cardiac muscle tissue morphogenesis
GO:0055010 ISS ventricular cardiac muscle tissue morphogenesis
GO:0060042 ISS retina morphogenesis in camera-type eye
GO:0060059 IEP embryonic retina morphogenesis in camera-type eye
GO:0060214 ISS endocardium formation
GO:0060298 ISS positive regulation of sarcomere organization
GO:0060412 ISS ventricular septum morphogenesis
GO:0060414 ISS aorta smooth muscle tissue morphogenesis
GO:0060421 ISS positive regulation of heart growth
GO:0060836 IDA lymphatic endothelial cell differentiation
GO:0060849 IMP regulation of transcription involved in lymphatic endothelial cell fate commitment
GO:0070309 IEP lens fiber cell morphogenesis
GO:0070365 IEP hepatocyte differentiation
GO:0070858 IMP negative regulation of bile acid biosynthetic process
GO:0097150 ISS neuronal stem cell maintenance
GO:2000179 ISS positive regulation of neural precursor cell proliferation
GO:2000979 ISS positive regulation of forebrain neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177288 Prox1-002 protein_coding Mus_musculus 0 3552
ENSMUST00000010319 Prox1-003 protein_coding Mus_musculus 0 3424
ENSMUST00000175916 Prox1-001 protein_coding Mus_musculus 0 3424
ENSDART00000077476 prox1a-001 protein_coding Danio_rerio 0 1221

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