C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prospero-related homeobox gene 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000077476 prox1a-001 ENSDARG00000055158 7955 - 17:33028346-33071546 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000077476
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000077476 4.292±1.08 31.310±22.80 16.562±1.49 4.848±0.00 1.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Z6 CIL_0003Z6_0001 CGP 17:32951521-33071546
CIL_0007J3 CIL_0007J3_0003 UCNEbase 17:33018650-33348984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001946 IGI lymphangiogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0021884 IMP forebrain neuron development
GO:0030239 IMP myofibril assembly
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0048885 IMP neuromast deposition
GO:0048886 IMP neuromast hair cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010319 Prox1-003 protein_coding Mus_musculus 0 1232
ENSMUST00000175916 Prox1-001 protein_coding Mus_musculus 0 1232
ENSMUST00000177288 Prox1-002 protein_coding Mus_musculus 0 1232
ENST00000261454 PROX1-201 protein_coding Homo_sapiens 0 1221
ENST00000366958 PROX1-001 protein_coding Homo_sapiens 0 1218
ENST00000435016 PROX1-002 protein_coding Homo_sapiens 0 1221
ENST00000471129 PROX1-004 protein_coding Homo_sapiens 0 481
ENST00000498508 PROX1-202 protein_coding Homo_sapiens 0 1218
ENST00000607425 PROX1-006 protein_coding Homo_sapiens 0 418

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