C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436002 NPM1P48-001 ENSG00000231821 9606 - 2:4514204-4515056 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverMuscleOvaryTestisENST00000436002
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000436002 0.060±0.00 0.087±0.00 0.012±0.00 0.045±0.00 0.011±0.00 0.012±0.00 0.141±0.00 0.055±0.00 0.014±0.00 0.033±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 846
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 797
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 298
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 4e-36 156

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