C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13423
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117205 Gm13423-001 ENSMUSG00000081648 10090 + 2:23202033-23203683 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117205
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117205 0.446±0.08 0.182±0.00 0.162±0.00 0.090±0.00 0.159±0.09 0.113±0.00 0.097±0.05 0.515±0.33 0.215±0.15 0.520±0.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 239
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 490
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 333
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 363
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 0 239
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 231
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 254
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 0 231
ENST00000427761 NPM1P22-001 processed_pseudogene Homo_sapiens 0 230
ENST00000429734 NPM1P25-001 processed_pseudogene Homo_sapiens 0 219
ENST00000436002 NPM1P48-001 processed_pseudogene Homo_sapiens 0 202
ENST00000444971 CLEC2D-017 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 0 254
ENST00000450070 NPM1P19-001 processed_pseudogene Homo_sapiens 0 252
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 228
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 429
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 490
ENST00000518264 NPM1P52-001 processed_pseudogene Homo_sapiens 2e-23 113
ENST00000518587 NPM1-008 retained_intron Homo_sapiens 0 309
ENST00000519955 NPM1-011 retained_intron Homo_sapiens 2e-22 110
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 281
ENST00000521260 NPM1-009 retained_intron Homo_sapiens 1e-33 147
ENST00000521672 NPM1-005 protein_coding Homo_sapiens 0 211
ENST00000521710 NPM1-010 retained_intron Homo_sapiens 2e-31 139
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 279
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 0 268
ENST00000564888 RP11-382N13.3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000583151 NPM1P45-001 processed_pseudogene Homo_sapiens 0 220
ENST00000588959 RP11-188I24.1-001 processed_pseudogene Homo_sapiens 6.02558e-44 180

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