C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class II, DQ beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437316 HLA-DQB2-003 ENSG00000232629 9606 - 6:32756098-32763534 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000437316
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000437316 6.294±0.00 23.462±0.00 0.522±0.00 2.876±2.54 2.151±1.68 0.464±0.00 5.208±0.00 0.131±0.00 16.654±12.96 0.833±0.39 0.939±0.98 1.106±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PL CIL_0001PL_0009 CGP 6:32741342-32763534
CIL_0001PK CIL_0001PK_0003 CGP 6:32756098-32817048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002504 IEA antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019882 IEA antigen processing and presentation
GO:0042613 IEA MHC class II protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040828 H2-Ab1-001 protein_coding Mus_musculus 0 621
ENSMUST00000173103 H2-Ab1-003 retained_intron Mus_musculus 0 383

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