C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183404 Tcf12-001 ENSMUSG00000032228 10090 - 9:71842688-72111847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000183404
Transcript ID Muscle
ENSMUST00000183404 0.527±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OZ CIL_0004OZ_0002 CGP 9:71626509-72111871
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0010628 IMP positive regulation of gene expression
GO:0043425 IEA bHLH transcription factor binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046332 IEA SMAD binding
GO:0046982 IDA protein heterodimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009938 tcf12-002 protein_coding Danio_rerio 0 405
ENST00000267811 TCF12-001 protein_coding Homo_sapiens 0 3631
ENST00000333725 TCF12-002 protein_coding Homo_sapiens 0 5524
ENST00000343827 TCF12-008 protein_coding Homo_sapiens 0 3535
ENST00000438423 TCF12-025 protein_coding Homo_sapiens 0 5507
ENST00000537840 TCF12-006 protein_coding Homo_sapiens 0 1271
ENST00000543579 TCF12-004 protein_coding Homo_sapiens 0 2305
ENST00000557843 TCF12-026 protein_coding Homo_sapiens 0 2863
ENST00000557947 TCF12-027 protein_coding Homo_sapiens 0 721
ENST00000558210 TCF12-022 processed_transcript Homo_sapiens 0 616
ENST00000558908 TCF12-023 processed_transcript Homo_sapiens 0 411
ENST00000559216 TCF12-013 processed_transcript Homo_sapiens 0 243
ENST00000559609 TCF12-003 protein_coding Homo_sapiens 0 2793
ENST00000559703 TCF12-010 protein_coding Homo_sapiens 0 1925
ENST00000559710 TCF12-009 protein_coding Homo_sapiens 0 1472
ENST00000560190 TCF12-024 processed_transcript Homo_sapiens 0 1031
ENST00000560191 TCF12-030 processed_transcript Homo_sapiens 0 1088
ENST00000560506 TCF12-020 processed_transcript Homo_sapiens 0 540
ENST00000560764 TCF12-018 processed_transcript Homo_sapiens 0 512
ENST00000560836 TCF12-032 protein_coding Homo_sapiens 0 206
ENST00000560887 TCF12-014 processed_transcript Homo_sapiens 0 460
ENST00000560948 TCF12-031 protein_coding Homo_sapiens 0 187
ENST00000561152 TCF12-028 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000561235 TCF12-017 processed_transcript Homo_sapiens 0 752
ENST00000561346 TCF12-016 processed_transcript Homo_sapiens 0 1107
ENST00000561420 TCF12-021 processed_transcript Homo_sapiens 0 1040
ENST00000561449 TCF12-011 processed_transcript Homo_sapiens 0 904
ENST00000561454 TCF12-029 processed_transcript Homo_sapiens 0 505
ENST00000569880 TCF12-033 retained_intron Homo_sapiens 0 278

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