C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034755 Tcf12-006 ENSMUSG00000032228 10090 - 9:71844268-72111821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034755 9.819±4.70 6.494±0.93 14.455±1.12 17.905±0.73 13.659±1.80 8.218±0.40 2.772±0.77 5.475±1.72 4.828±2.66 14.573±5.13 2.296±0.37 14.358±4.01 7.482±3.04 1.365±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OZ CIL_0004OZ_0002 CGP 9:71626509-72111871
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0010628 IMP positive regulation of gene expression
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046982 IDA protein heterodimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009938 tcf12-002 protein_coding Danio_rerio 0 405
ENST00000267811 TCF12-001 protein_coding Homo_sapiens 0 5432
ENST00000333725 TCF12-002 protein_coding Homo_sapiens 0 3539
ENST00000343827 TCF12-008 protein_coding Homo_sapiens 0 4447
ENST00000438423 TCF12-025 protein_coding Homo_sapiens 0 3544
ENST00000537840 TCF12-006 protein_coding Homo_sapiens 0 1781
ENST00000543579 TCF12-004 protein_coding Homo_sapiens 0 1260
ENST00000557843 TCF12-026 protein_coding Homo_sapiens 0 4617
ENST00000557947 TCF12-027 protein_coding Homo_sapiens 0 721
ENST00000558908 TCF12-023 processed_transcript Homo_sapiens 0 411
ENST00000559216 TCF12-013 processed_transcript Homo_sapiens 0 243
ENST00000559609 TCF12-003 protein_coding Homo_sapiens 0 1696
ENST00000559703 TCF12-010 protein_coding Homo_sapiens 0 1685
ENST00000559710 TCF12-009 protein_coding Homo_sapiens 0 1580
ENST00000560190 TCF12-024 processed_transcript Homo_sapiens 0 1031
ENST00000560191 TCF12-030 processed_transcript Homo_sapiens 0 1088
ENST00000560506 TCF12-020 processed_transcript Homo_sapiens 0 647
ENST00000560764 TCF12-018 processed_transcript Homo_sapiens 0 756
ENST00000560836 TCF12-032 protein_coding Homo_sapiens 0 206
ENST00000560887 TCF12-014 processed_transcript Homo_sapiens 0 460
ENST00000560948 TCF12-031 protein_coding Homo_sapiens 0 187
ENST00000561152 TCF12-028 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000561235 TCF12-017 processed_transcript Homo_sapiens 0 752
ENST00000561346 TCF12-016 processed_transcript Homo_sapiens 0 1107
ENST00000561420 TCF12-021 processed_transcript Homo_sapiens 0 800
ENST00000561449 TCF12-011 processed_transcript Homo_sapiens 0 771
ENST00000561454 TCF12-029 processed_transcript Homo_sapiens 0 505
ENST00000569880 TCF12-033 retained_intron Homo_sapiens 0 278

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