C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184523 Tcf12-005 ENSMUSG00000032228 10090 - 9:71849894-72111812 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyOvaryTestisENSMUST00000184523
Transcript ID Adipose Breast Heart Kidney Ovary Testis
ENSMUST00000184523 8.527±0.83 7.735±0.00 3.372±0.00 3.625±0.00 10.852±1.89 1.562±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OZ CIL_0004OZ_0002 CGP 9:71626509-72111871
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0010628 IMP positive regulation of gene expression
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267811 TCF12-001 protein_coding Homo_sapiens 0 1707
ENST00000333725 TCF12-002 protein_coding Homo_sapiens 0 2774
ENST00000343827 TCF12-008 protein_coding Homo_sapiens 0 966
ENST00000438423 TCF12-025 protein_coding Homo_sapiens 0 2745
ENST00000537840 TCF12-006 protein_coding Homo_sapiens 0 966
ENST00000543579 TCF12-004 protein_coding Homo_sapiens 0 2012
ENST00000557843 TCF12-026 protein_coding Homo_sapiens 0 1578
ENST00000557947 TCF12-027 protein_coding Homo_sapiens 0 544
ENST00000558210 TCF12-022 processed_transcript Homo_sapiens 0 616
ENST00000558908 TCF12-023 processed_transcript Homo_sapiens 0 411
ENST00000559216 TCF12-013 processed_transcript Homo_sapiens 0 243
ENST00000559609 TCF12-003 protein_coding Homo_sapiens 0 2976
ENST00000559703 TCF12-010 protein_coding Homo_sapiens 0 1186
ENST00000559710 TCF12-009 protein_coding Homo_sapiens 0 966
ENST00000560190 TCF12-024 processed_transcript Homo_sapiens 0 407
ENST00000560506 TCF12-020 processed_transcript Homo_sapiens 0 540
ENST00000560764 TCF12-018 processed_transcript Homo_sapiens 0 512
ENST00000560887 TCF12-014 processed_transcript Homo_sapiens 0 460
ENST00000561152 TCF12-028 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000561235 TCF12-017 processed_transcript Homo_sapiens 0 752
ENST00000561346 TCF12-016 processed_transcript Homo_sapiens 0 1107
ENST00000561420 TCF12-021 processed_transcript Homo_sapiens 0 1040
ENST00000561449 TCF12-011 processed_transcript Homo_sapiens 0 904
ENST00000569880 TCF12-033 retained_intron Homo_sapiens 2.99878e-43 178

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