C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IG
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144725 Myo1g-002 ENSMUSG00000020437 10090 - 11:6506674-6520897 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000144725
Transcript ID Adrenal Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000144725 0.465±0.00 0.133±0.00 10.299±3.25 1.380±0.33 0.393±0.08 0.070±0.00 0.582±0.16 0.916±0.07 0.118±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SE CIL_0000SE_0002 CGP 11:6467599-6520965
CIL_0000SD CIL_0000SD_0002 CGP 11:6506548-6596744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001891 IDA phagocytic cup
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0005902 IDA microvillus
GO:0006887 IMP exocytosis
GO:0006909 IMP phagocytosis
GO:0030027 IDA lamellipodium
GO:0030175 IDA filopodium
GO:0031256 IDA leading edge membrane
GO:0031589 IMP cell-substrate adhesion
GO:0071976 IMP cell gliding
GO:0072678 IMP T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052418 MYO1G-201 protein_coding Danio_rerio 0 270
ENSDART00000142774 MYO1G-001 protein_coding Danio_rerio 0 270
ENSDART00000042203 myo6b-201 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000088801 myo6b-202 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000131566 myo6b-002 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000061762 myo6b-001 protein_coding Danio_rerio 0.000000000000001 90
ENST00000258787 MYO1G-001 protein_coding Homo_sapiens 0 2970
ENST00000359786 MYO1C-001 protein_coding Homo_sapiens 5e-37 161
ENST00000361007 MYO1C-201 protein_coding Homo_sapiens 5e-37 161
ENST00000397274 MYO9B-201 protein_coding Homo_sapiens 2e-18 100
ENST00000438665 MYO1C-010 protein_coding Homo_sapiens 5e-37 161
ENST00000463516 MYO1G-004 retained_intron Homo_sapiens 0 1040
ENST00000464434 MYO1G-002 nonsense_mediated_decay Homo_sapiens 0 1404
ENST00000480503 MYO1G-005 retained_intron Homo_sapiens 0 907
ENST00000483585 MYO1G-003 retained_intron Homo_sapiens 0 1423
ENST00000488554 MYO1G-006 retained_intron Homo_sapiens 0 2534
ENST00000495831 MYO1G-007 nonsense_mediated_decay Homo_sapiens 0 3097
ENST00000545534 MYO1C-003 protein_coding Homo_sapiens 4e-37 161
ENST00000575158 MYO1C-002 protein_coding Homo_sapiens 5e-37 161
ENST00000594824 MYO9B-002 protein_coding Homo_sapiens 2e-18 100
ENST00000595618 MYO9B-001 protein_coding Homo_sapiens 2e-18 100
ENST00000595641 MYO9B-003 protein_coding Homo_sapiens 1e-18 100

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