C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS19 (MET18 S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026168 Mms19-009 ENSMUSG00000025159 10090 - 19:41944377-41981132 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000026168
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000026168 7.221±1.47 8.258±0.58 11.386±2.05 7.731±0.42 4.167±0.89 7.898±2.30 4.993±0.98 10.841±2.15 14.120±3.53 5.386±0.86 5.772±1.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0002 CGP 19:41922980-41944095
CIL_0005Y1 CIL_0005Y1_0002 CGP 19:41933472-41981157
CIL_0004VE CIL_0004VE_0002 CGP 19:41941086-42034641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005819 ISS spindle
GO:0006259 ISS DNA metabolic process
GO:0006281 ISS DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007059 ISS chromosome segregation
GO:0016226 ISS iron-sulfur cluster assembly
GO:0071817 ISS MMXD complex
GO:0097361 ISS CIA complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327238 MMS19-018 protein_coding Homo_sapiens 0 2158
ENST00000355839 MMS19-201 protein_coding Homo_sapiens 0 3398
ENST00000370782 MMS19-006 protein_coding Homo_sapiens 0 2863
ENST00000415383 MMS19-007 nonsense_mediated_decay Homo_sapiens 0 2850
ENST00000422685 MMS19-010 protein_coding Homo_sapiens 0 281
ENST00000434392 MMS19-014 nonsense_mediated_decay Homo_sapiens 0 946
ENST00000434538 MMS19-020 protein_coding Homo_sapiens 0 1967
ENST00000437002 MMS19-012 protein_coding Homo_sapiens 0 536
ENST00000438925 MMS19-005 protein_coding Homo_sapiens 0 2863
ENST00000439048 MMS19-004 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000441194 MMS19-009 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000448660 MMS19-013 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000477575 MMS19-003 retained_intron Homo_sapiens 0 538
ENST00000480108 MMS19-016 retained_intron Homo_sapiens 0 359
ENST00000483626 MMS19-008 processed_transcript Homo_sapiens 0 418
ENST00000485400 MMS19-002 retained_intron Homo_sapiens 0 254
ENST00000495415 MMS19-021 retained_intron Homo_sapiens 0 1024

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