C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS19 (MET18 S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163287 Mms19-011 ENSMUSG00000025159 10090 - 19:41944209-41969722 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyMuscleOvaryPlacentaTestisENSMUST00000163287
Transcript ID Bladder Brain Breast Kidney Muscle Ovary Placenta Testis
ENSMUST00000163287 4.443±0.00 2.080±0.00 8.952±0.00 4.273±0.00 1.600±0.00 6.378±0.00 3.297±0.00 0.964±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0002 CGP 19:41922980-41944095
CIL_0005Y1 CIL_0005Y1_0002 CGP 19:41933472-41981157
CIL_0004VE CIL_0004VE_0002 CGP 19:41941086-42034641

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327238 MMS19-018 protein_coding Homo_sapiens 0 3073
ENST00000355839 MMS19-201 protein_coding Homo_sapiens 0 2158
ENST00000370782 MMS19-006 protein_coding Homo_sapiens 0 2158
ENST00000415383 MMS19-007 nonsense_mediated_decay Homo_sapiens 0 2145
ENST00000422685 MMS19-010 protein_coding Homo_sapiens 0 542
ENST00000434392 MMS19-014 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000434538 MMS19-020 protein_coding Homo_sapiens 0 1967
ENST00000437002 MMS19-012 protein_coding Homo_sapiens 0 773
ENST00000438925 MMS19-005 protein_coding Homo_sapiens 0 2158
ENST00000439048 MMS19-004 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000441194 MMS19-009 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000448660 MMS19-013 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000477575 MMS19-003 retained_intron Homo_sapiens 0 390
ENST00000480108 MMS19-016 retained_intron Homo_sapiens 0 359
ENST00000483626 MMS19-008 processed_transcript Homo_sapiens 0 881
ENST00000485400 MMS19-002 retained_intron Homo_sapiens 0 254
ENST00000495415 MMS19-021 retained_intron Homo_sapiens 0 1024

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