C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS19 (MET18 S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171561 Mms19-001 ENSMUSG00000025159 10090 - 19:41941086-41981157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000171561
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000171561 1.086±0.00 1.007±0.17 1.147±0.00 2.498±0.74 0.320±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0002 CGP 19:41922980-41944095
CIL_0005Y1 CIL_0005Y1_0002 CGP 19:41933472-41981157
CIL_0004VE CIL_0004VE_0002 CGP 19:41941086-42034641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005819 ISS spindle
GO:0006259 ISS DNA metabolic process
GO:0006281 ISS DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007059 ISS chromosome segregation
GO:0016020 IEA membrane
GO:0016226 ISS iron-sulfur cluster assembly
GO:0030331 IEA estrogen receptor binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0071817 ISS MMXD complex
GO:0097361 ISS CIA complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235345 SLC35D1-001 protein_coding Homo_sapiens 0.00000005 66
ENST00000327238 MMS19-018 protein_coding Homo_sapiens 0 2158
ENST00000345745 ZDHHC16-006 protein_coding Homo_sapiens 2.94273e-44 183
ENST00000352634 ZDHHC16-004 protein_coding Homo_sapiens 4.06377e-44 183
ENST00000353979 ZDHHC16-005 protein_coding Homo_sapiens 4.06377e-44 183
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0.00000002 69
ENST00000355839 MMS19-201 protein_coding Homo_sapiens 0 2863
ENST00000370782 MMS19-006 protein_coding Homo_sapiens 0 3568
ENST00000370842 ZDHHC16-007 protein_coding Homo_sapiens 4.06377e-44 183
ENST00000370846 ZDHHC16-013 protein_coding Homo_sapiens 1e-38 165
ENST00000370854 ZDHHC16-003 protein_coding Homo_sapiens 4.06377e-44 183
ENST00000393760 ZDHHC16-201 protein_coding Homo_sapiens 4.06377e-44 183
ENST00000415383 MMS19-007 nonsense_mediated_decay Homo_sapiens 0 3319
ENST00000417044 ZDHHC16-017 protein_coding Homo_sapiens 2.94273e-44 183
ENST00000420089 ZDHHC16-016 protein_coding Homo_sapiens 2.94273e-44 183
ENST00000422685 MMS19-010 protein_coding Homo_sapiens 0 542
ENST00000434392 MMS19-014 nonsense_mediated_decay Homo_sapiens 0 946
ENST00000434538 MMS19-020 protein_coding Homo_sapiens 0 1967
ENST00000437002 MMS19-012 protein_coding Homo_sapiens 0 942
ENST00000438925 MMS19-005 protein_coding Homo_sapiens 0 3581
ENST00000439048 MMS19-004 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000441194 MMS19-009 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000448660 MMS19-013 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000459777 ZDHHC16-011 processed_transcript Homo_sapiens 7e-39 165
ENST00000465774 RBM20-008 retained_intron Homo_sapiens 0.000000007 66
ENST00000466895 ZDHHC16-012 processed_transcript Homo_sapiens 7e-39 165
ENST00000477575 MMS19-003 retained_intron Homo_sapiens 0 547
ENST00000480108 MMS19-016 retained_intron Homo_sapiens 0 359
ENST00000480746 SIDT1-010 retained_intron Homo_sapiens 0.000000000003 77
ENST00000483626 MMS19-008 processed_transcript Homo_sapiens 0 909
ENST00000485400 MMS19-002 retained_intron Homo_sapiens 0 254
ENST00000487315 ZDHHC16-001 processed_transcript Homo_sapiens 1.96182e-44 183
ENST00000495415 MMS19-021 retained_intron Homo_sapiens 0 1024
ENST00000495735 ZDHHC16-008 processed_transcript Homo_sapiens 4.06377e-44 183
ENST00000589372 UBL5-005 retained_intron Homo_sapiens 0.00000000007 73

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