C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440049 RPL21P2-001 ENSG00000215063 9606 - 20:4059633-4060113 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungTestisENST00000440049
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Testis
ENST00000440049 0.060±0.00 0.031±0.00 0.064±0.00 0.094±0.00 0.146±0.00 0.059±0.00 0.032±0.00 0.030±0.00 0.050±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068E CIL_00068E_0002 CGP 20:3927309-4187747

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 261
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 6.00036e-42 174
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1e-28 130

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