C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441658 RP11-77O7.1-001 ENSG00000232228 9606 - 2:69594741-69595058 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000441658
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000441658 0.052±0.00 0.323±0.00 0.123±0.07 0.110±0.00 0.607±0.00 0.504±0.30 0.165±0.00 0.268±0.00 0.312±0.26 0.249±0.00 0.552±0.00 0.148±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YR CIL_0000YR_0002 CGP 2:69457995-69826464

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 401
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 398
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 396
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 392
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 374
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 320
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 198

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