C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ubiquitin-conjugating enzyme E2F (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441728 UBE2F-007 ENSG00000184182 9606 + 2:237966945-238041886 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartTestisENST00000441728
Transcript ID Brain Colon Heart Testis
ENST00000441728 10.578±0.00 6.381±0.00 2.489±1.65 13.324±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0019788 IDA NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178627 Ube2f-201 protein_coding Mus_musculus 0 809
ENSMUST00000171112 Ube2f-004 protein_coding Mus_musculus 0 809
ENSMUST00000171165 Ube2f-002 protein_coding Mus_musculus 0 809
ENSMUST00000191368 Ube2f-003 protein_coding Mus_musculus 0 684
ENSMUST00000059743 Ube2f-001 protein_coding Mus_musculus 0 634
ENSMUST00000071825 Gm5434-201 protein_coding Mus_musculus 0 597
ENSMUST00000185950 Ube2f-009 retained_intron Mus_musculus 0 418
ENSMUST00000080066 Gm7099-201 pseudogene Mus_musculus 0 374
ENSMUST00000188576 Ube2f-007 retained_intron Mus_musculus 0 281
ENSMUST00000191533 Ube2f-006 protein_coding Mus_musculus 0 219
ENSMUST00000181346 Gm26864-001 processed_pseudogene Mus_musculus 1e-27 128
ENSMUST00000185697 Ube2f-005 retained_intron Mus_musculus 4e-23 113
ENSMUST00000189589 Ube2f-010 retained_intron Mus_musculus 1e-17 95

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