C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5434
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071825 Gm5434-201 ENSMUSG00000059301 10090 + 12:36090379-36091829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000071825
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000071825 0.039±0.01 0.008±0.00 0.051±0.01 0.022±0.00 0.027±0.00 0.024±0.01 0.035±0.00 0.453±0.15 0.017±0.01 0.101±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0019788 ISS NEDD8 ligase activity
GO:0045116 ISS protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272930 UBE2F-001 protein_coding Homo_sapiens 0 1000
ENST00000409332 UBE2F-004 protein_coding Homo_sapiens 0 745
ENST00000409633 UBE2F-011 protein_coding Homo_sapiens 0 547
ENST00000409953 UBE2F-020 protein_coding Homo_sapiens 0 791
ENST00000414443 UBE2F-201 protein_coding Homo_sapiens 0 769
ENST00000416292 UBE2F-010 protein_coding Homo_sapiens 0 427
ENST00000417231 UBE2F-013 nonsense_mediated_decay Homo_sapiens 0 706
ENST00000433241 UBE2F-016 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000433568 UBE2F-008 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000434137 UBE2F-023 protein_coding Homo_sapiens 0 472
ENST00000434655 UBE2F-017 protein_coding Homo_sapiens 0 643
ENST00000439338 UBE2F-019 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000439780 UBE2F-018 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000440223 UBE2F-006 nonsense_mediated_decay Homo_sapiens 7e-34 148
ENST00000441728 UBE2F-007 nonsense_mediated_decay Homo_sapiens 0 597
ENST00000445676 UBE2F-014 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000448502 UBE2F-009 protein_coding Homo_sapiens 0 235
ENST00000449191 UBE2F-SCLY-002 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000449891 UBE2F-SCLY-001 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000454786 UBE2F-002 nonsense_mediated_decay Homo_sapiens 0 610
ENST00000455999 UBE2F-012 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000472479 UBE2F-003 retained_intron Homo_sapiens 0 459
ENST00000480828 UBE2F-021 retained_intron Homo_sapiens 0 560
ENST00000566646 UBE2FP2-001 processed_pseudogene Homo_sapiens 0 335
ENST00000612130 UBE2F-202 protein_coding Homo_sapiens 0 985
ENST00000619760 C20orf194-002 processed_transcript Homo_sapiens 0 652

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