C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: coiled-coil domain containing 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442201 CCDC39-001 ENSG00000145075 9606 - 3:180614588-180679500 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungTestisENST00000442201
Transcript ID Lung Testis
ENST00000442201 1.028±0.00 1.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FH CIL_0001FH_0001 CGP 3:179794958-180617828
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001947 IMP heart looping
GO:0005856 IEA cytoskeleton
GO:0005930 IDA axoneme
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0060285 IMP cilium-dependent cell motility
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 IMP axonemal dynein complex assembly
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029222 Ccdc39-001 protein_coding Mus_musculus 0 2074
ENSMUST00000117915 Ttc14-005 protein_coding Mus_musculus 0 204
ENSMUST00000099153 Ttc14-001 protein_coding Mus_musculus 0 204

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