C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443503 CTDSPL-002 ENSG00000144677 9606 + 3:37861960-37984469 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000443503
Transcript ID Adrenal Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000443503 1.729±0.00 0.948±0.00 3.784±3.04 8.370±0.00 2.497±0.00 4.004±0.00 2.403±1.08 5.864±1.63 3.185±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VQ CIL_0005VQ_0001 CGP 3:37452115-37984469
CIL_0008CZ CIL_0008CZ_0001 VISTA 3:37464508-38067589
CIL_00099X CIL_00099X_0001 VISTA 3:37469210-38073013
CIL_0005AN CIL_0005AN_0001 CGP 3:37861960-38007188

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073109 Ctdspl-001 protein_coding Mus_musculus 0 1182
ENSMUST00000172464 Ctdspl-003 protein_coding Mus_musculus 0 1070
ENSMUST00000174132 Ctdspl-002 retained_intron Mus_musculus 0 693
ENSMUST00000174841 Ctdspl-004 processed_transcript Mus_musculus 0 361

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