C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444513 RP11-1018J11.1-001 ENSG00000256211 9606 + 12:16989126-16989936 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyMusclePlacentaTestisENST00000444513
Transcript ID Brain Breast Colon Heart Kidney Muscle Placenta Testis
ENST00000444513 0.022±0.00 0.022±0.00 0.020±0.00 0.060±0.00 0.044±0.00 0.059±0.00 0.158±0.00 0.028±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388
CIL_0007TA CIL_0007TA_0001 VISTA 12:16580382-17181483
CIL_00091U CIL_00091U_0001 VISTA 12:16718777-17321842
CIL_000901 CIL_000901_0001 VISTA 12:16858850-17460825

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 606
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 606
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 472
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 431
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 0 235
ENSMUST00000093121 Skp1a-003 retained_intron Mus_musculus 2e-32 143

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