Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	tubulin beta 8 class VIII pseudogene 1
ENST00000447235	TUBB8P1-001	ENSG00000229298	9606	-	9:21811621-21812347	processed_pseudogene

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Heart	Kidney	Liver	Lung	Ovary	Placenta	Testis
ENST00000447235	0.070±0.00	0.563±0.00	1.191±0.00	0.136±0.00	0.279±0.07	0.209±0.00	0.100±0.00	0.636±0.00	1.597±0.00	0.424±0.28	0.066±0.00	0.112±0.09

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00074E	CIL_00074E_0001	CGP	9:21480839-21937651
CIL_0007YE	CIL_0007YE_0001	VISTA	9:21773412-22380489
CIL_0007U7	CIL_0007U7_0001	VISTA	9:21778886-22382106
CIL_0007YH	CIL_0007YH_0001	VISTA	9:21779916-22382548
CIL_0007YG	CIL_0007YG_0001	VISTA	9:21783894-22389830
CIL_0007U8	CIL_0007U8_0001	VISTA	9:21787553-22389799
CIL_00095D	CIL_00095D_0001	VISTA	9:21788649-22389830
CIL_000945	CIL_000945_0001	VISTA	9:21789705-22397955
CIL_0008WE	CIL_0008WE_0001	VISTA	9:21797850-22401302
CIL_0007YC	CIL_0007YC_0001	VISTA	9:21801286-22408086
CIL_00099P	CIL_00099P_0001	VISTA	9:21802665-22404754
CIL_0008P9	CIL_0008P9_0001	VISTA	9:21802671-22404650
CIL_00099O	CIL_00099O_0001	VISTA	9:21806995-22409801
CIL_0008TL	CIL_0008TL_0001	VISTA	9:21807568-22413901

Gene Ontology
GO ID	Evidence Type	GO Description
No GO terms available.

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000187481	RP23-8J15.8-001	processed_pseudogene	Mus_musculus	0	464
ENSMUST00000071134	Tubb3-001	protein_coding	Mus_musculus	0	424
ENSDART00000143702	zgc:123194-001	protein_coding	Danio_rerio	0	374
ENSDART00000066859	tubb4b-001	protein_coding	Danio_rerio	0	320
ENSDART00000131187	tubb4b-201	protein_coding	Danio_rerio	0	315

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