C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 3 class III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071134 Tubb3-001 ENSMUSG00000062380 10090 + 8:123411424-123422015 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005N CIL_00005N_0002 CGP 8:123411424-123463270

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007067 IEA mitotic nuclear division
GO:0007411 IMP axon guidance
GO:0015630 IDA microtubule cytoskeleton
GO:0030182 IEA neuron differentiation
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0042277 IEA peptide binding
GO:0043025 IDA neuronal cell body
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1234
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1173
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1168
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1147
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1134
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1103
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1079
ENSDART00000024135 protein_coding Danio_rerio 0 1042
ENSDART00000129104 protein_coding Danio_rerio 0 955
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 918
ENST00000217133 TUBB1-001 protein_coding Homo_sapiens 0 813
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1321
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1362
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 987
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 1026
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1858
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1504
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1360
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1360
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000405234 TUBBP9-001 processed_pseudogene Homo_sapiens 0 518
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 1338
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1434
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 566
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1203
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 933
ENST00000430210 TUBB8P10-001 unprocessed_pseudogene Homo_sapiens 0 562
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1275
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000437546 TUBB4BP3-001 processed_pseudogene Homo_sapiens 0 248
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000447235 TUBB8P1-001 processed_pseudogene Homo_sapiens 0 424
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 933
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 1038
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1212
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1214
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 883
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1243
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 987
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1362
ENST00000553656 TUBB3-007 nonsense_mediated_decay Homo_sapiens 9e-21 104
ENST00000553967 TUBB3-011 protein_coding Homo_sapiens 0 357
ENST00000554116 TUBB3-008 processed_transcript Homo_sapiens 3e-20 102
ENST00000554336 TUBB3-010 protein_coding Homo_sapiens 0 353
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1760
ENST00000554689 RP11-88E18.1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000554927 TUBB3-009 retained_intron Homo_sapiens 0 233
ENST00000555576 TUBB3-005 protein_coding Homo_sapiens 0 359
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1629
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 900
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1760
ENST00000557262 TUBB3-006 nonsense_mediated_decay Homo_sapiens 2e-20 104
ENST00000557490 TUBB3-014 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 963
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 889
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 918
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 889
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 977
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 977
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 1059
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 918
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 913
ENST00000590103 TUBB6-008 protein_coding Homo_sapiens 0 1009
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 1133
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 370
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 370
ENST00000595324 TUBB4A-011 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 405
ENST00000601152 TUBB4A-007 protein_coding Homo_sapiens 0 316
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1175

Loading