C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448416 SYNPO2-201 ENSG00000172403 9606 + 4:118888841-119061245 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverOvaryENST00000448416
Transcript ID Adrenal Colon Kidney Liver Ovary
ENST00000448416 12.179±0.00 29.348±0.00 1.801±0.00 0.234±0.00 10.406±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051443 Synpo2-001 protein_coding Mus_musculus 0 335
ENSMUST00000106426 Synpo2-005 protein_coding Mus_musculus 0 335
ENSMUST00000106427 Synpo2-004 protein_coding Mus_musculus 0 335
ENSMUST00000184403 Synpo2-002 processed_transcript Mus_musculus 7.00649e-45 187
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000008 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000006 58
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0.00008 55

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