C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106427 Synpo2-004 ENSMUSG00000050315 10090 - 3:123076519-123236147 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverTestisENSMUST00000106427
Transcript ID Liver Testis
ENSMUST00000106427 0.025±0.01 0.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005O CIL_00005O_0003 CGP 3:123006206-123236149
CIL_0005EP CIL_0005EP_0002 CGP 3:123076519-123365635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISA actin binding
GO:0030018 ISA Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307142 SYNPO2-001 protein_coding Homo_sapiens 0 2702
ENST00000429713 SYNPO2-003 protein_coding Homo_sapiens 0 2702
ENST00000434046 SYNPO2-002 protein_coding Homo_sapiens 0 2658
ENST00000448416 SYNPO2-201 protein_coding Homo_sapiens 0 335
ENST00000504178 SYNPO2-004 protein_coding Homo_sapiens 0 2874
ENST00000610556 SYNPO2-202 protein_coding Homo_sapiens 0 2519

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