C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptopodin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172403 SYNPO2 9606 + 4:118850688-119061247 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307142 SYNPO2-001 118888841-119061247 protein_coding
  ENST00000429713 SYNPO2-003 118888855-119035835 protein_coding
  ENST00000434046 SYNPO2-002 118889037-119037383 protein_coding
  ENST00000448416 SYNPO2-201 118888841-119061245 protein_coding
  ENST00000504178 SYNPO2-004 119023471-119061247 protein_coding
  ENST00000610556 SYNPO2-202 118850688-119061245 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307142ENST00000429713ENST00000434046ENST00000448416ENST00000504178ENST00000610556
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307142 N/A N/A N/A N/A N/A 3.486±0.00 N/A N/A 2.871±0.00 N/A 9.549±7.49 N/A N/A
ENST00000429713 12.260±0.00 N/A 1.176±0.43 N/A N/A 8.745±3.65 N/A 141.646±0.00 N/A 238.601±192.40 N/A 3.794±0.00 5.667±3.73
ENST00000434046 N/A N/A 2.636±0.00 N/A N/A 14.188±1.43 N/A 0.407±0.00 N/A 170.708±157.91 N/A N/A N/A
ENST00000448416 N/A 12.179±0.00 N/A N/A 29.348±0.00 N/A 1.801±0.00 0.234±0.00 N/A N/A 10.406±0.00 N/A N/A
ENST00000504178 N/A 14.875±0.00 1.345±0.00 3.707±0.00 N/A 3.099±0.00 0.791±0.00 N/A 2.853±0.00 N/A 2.273±0.00 N/A 7.553±6.44
ENST00000610556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005925 IDA focal adhesion
GO:0015629 IDA actin cytoskeleton
GO:0030018 ISS Z disc
GO:0051371 ISS muscle alpha-actinin binding
GO:0071889 ISS 14-3-3 protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077157 SYNPO2 (1 of 2) synaptopodin 2 protein_coding Danio_rerio
ENSDARG00000079675 SYNPO2 (2 of 2) synaptopodin 2 protein_coding Danio_rerio
ENSMUSG00000050315 Synpo2 synaptopodin 2 protein_coding Mus_musculus

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