C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051443 Synpo2-001 ENSMUSG00000050315 10090 - 3:123110964-123236147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051443 9.022±2.22 0.443±0.17 36.686±0.00 1.920±2.48 8.430±4.41 7.762±0.88 13.139±1.14 1.663±0.36 0.047±0.05 3.408±0.17 102.241±5.27 1.496±0.49 0.833±0.43 0.250±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005O CIL_00005O_0003 CGP 3:123006206-123236149
CIL_0005EP CIL_0005EP_0002 CGP 3:123076519-123365635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0030018 ISS Z disc
GO:0051371 IDA muscle alpha-actinin binding
GO:0071889 IDA 14-3-3 protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307142 SYNPO2-001 protein_coding Homo_sapiens 0 2865
ENST00000429713 SYNPO2-003 protein_coding Homo_sapiens 0 3092
ENST00000434046 SYNPO2-002 protein_coding Homo_sapiens 0 2826
ENST00000448416 SYNPO2-201 protein_coding Homo_sapiens 0 335
ENST00000504178 SYNPO2-004 protein_coding Homo_sapiens 0 2488
ENST00000610556 SYNPO2-202 protein_coding Homo_sapiens 0 2684

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