C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106426 Synpo2-005 ENSMUSG00000050315 10090 - 3:123076519-123236147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000106426
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106426 17.230±0.06 0.407±0.08 22.864±0.00 0.055±0.02 0.879±0.00 5.095±0.82 0.279±0.06 0.029±0.01 1.074±0.20 3.437±1.17 2.710±0.00 0.317±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005O CIL_00005O_0003 CGP 3:123006206-123236149
CIL_0005EP CIL_0005EP_0002 CGP 3:123076519-123365635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISA actin binding
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0015629 IEA actin cytoskeleton
GO:0030018 ISA Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307142 SYNPO2-001 protein_coding Homo_sapiens 0 3251
ENST00000429713 SYNPO2-003 protein_coding Homo_sapiens 0 2865
ENST00000434046 SYNPO2-002 protein_coding Homo_sapiens 0 2824
ENST00000448416 SYNPO2-201 protein_coding Homo_sapiens 0 335
ENST00000504178 SYNPO2-004 protein_coding Homo_sapiens 0 2488
ENST00000610556 SYNPO2-202 protein_coding Homo_sapiens 0 3070

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