C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UBE2F-SCLY readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449191 UBE2F-SCLY-002 ENSG00000258984 9606 + 2:237967075-238068170 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782
CIL_0003NI CIL_0003NI_0001 CGP 2:237967014-238099413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178627 Ube2f-201 protein_coding Mus_musculus 0 440
ENSMUST00000171165 Ube2f-002 protein_coding Mus_musculus 0 438
ENSMUST00000188576 Ube2f-007 retained_intron Mus_musculus 0 403
ENSMUST00000171112 Ube2f-004 protein_coding Mus_musculus 0 401
ENSMUST00000191368 Ube2f-003 protein_coding Mus_musculus 0 401
ENSMUST00000059743 Ube2f-001 protein_coding Mus_musculus 0 401
ENSMUST00000080066 Gm7099-201 pseudogene Mus_musculus 0 350
ENSMUST00000071825 Gm5434-201 protein_coding Mus_musculus 0 339
ENSMUST00000120831 Gm16016-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000191533 Ube2f-006 protein_coding Mus_musculus 0 219
ENSMUST00000189589 Ube2f-010 retained_intron Mus_musculus 0 215
ENSMUST00000185950 Ube2f-009 retained_intron Mus_musculus 5.60519e-45 185
ENSMUST00000181346 Gm26864-001 processed_pseudogene Mus_musculus 1e-27 128
ENSMUST00000187494 Ube2f-008 retained_intron Mus_musculus 1e-26 124
ENSMUST00000185697 Ube2f-005 retained_intron Mus_musculus 8e-24 115

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