| Source ID |
Type |
Tax ID |
Position |
| FOXP2 |
UCNEbase |
7955 |
5:15557121-15754859  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007K6_0005 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000128573' => 'forkhead box P2',
'ENSG00000135272' => 'MyoD family inhibitor domain containing',
'ENSG00000202334' => 'RNA, 5S ribosomal pseudogene 238',
'ENSG00000224595' => null,
'ENSG00000236580' => null,
'ENSG00000266229' => null,
'ENSG00000272230' => 'microRNA 3666',
'ENSG00000105967' => 'transcription factor EC',
'ENSG00000199224' => 'Y RNA',
'ENSG00000199764' => 'Y RNA',
'ENSG00000202377' => 'Small nucleolar RNA SNORA25',
'ENSG00000225535' => 'long intergenic non-protein coding RNA 1393',
'ENSG00000226962' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 6',
'ENSG00000233607' => 'long intergenic non-protein coding RNA 1392',
'ENSG00000240973' => null,
'ENSG00000242072' => null,
'ENSG00000243345' => null,
'ENSG00000244565' => null,
'ENSMUSG00000029553' => 'transcription factor EC',
'ENSMUSG00000029563' => 'forkhead box P2',
'ENSMUSG00000041390' => 'MyoD family inhibitor domain containing',
'ENSMUSG00000081744' => 'predicted gene 5721',
'ENSMUSG00000093317' => 'predicted gene, 25470',
'ENSMUSG00000101034' => 'predicted gene 29589',
'ENSDARG00000005453' => 'forkhead box P2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'transcription factor EC'
),
'gene_name_arr' => array(
'ENSG00000128573' => 'FOXP2',
'ENSG00000135272' => 'MDFIC',
'ENSG00000202334' => 'RNA5SP238',
'ENSG00000224595' => 'AC073626.2',
'ENSG00000236580' => 'RP11-95P9.1',
'ENSG00000266229' => 'AC020606.1',
'ENSG00000272230' => 'MIR3666',
'ENSG00000105967' => 'TFEC',
'ENSG00000199224' => 'Y_RNA',
'ENSG00000199764' => 'Y_RNA',
'ENSG00000202377' => 'SNORA25',
'ENSG00000225535' => 'LINC01393',
'ENSG00000226962' => 'RAC1P6',
'ENSG00000233607' => 'LINC01392',
'ENSG00000240973' => 'RP11-458K10.2',
'ENSG00000242072' => 'RP11-458K10.1',
'ENSG00000243345' => 'RP11-458K10.3',
'ENSG00000244565' => 'RP11-222O23.1',
'ENSMUSG00000029553' => 'Tfec',
'ENSMUSG00000029563' => 'Foxp2',
'ENSMUSG00000041390' => 'Mdfic',
'ENSMUSG00000081744' => 'Gm5721',
'ENSMUSG00000093317' => 'Gm25470',
'ENSMUSG00000101034' => 'RP24-434O21.1',
'ENSDARG00000005453' => 'foxp2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'tfec'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 87 => 'Colon',
(int) 109 => 'Heart',
(int) 140 => 'Kidney',
(int) 169 => 'Liver',
(int) 197 => 'Lung',
(int) 219 => 'Muscle',
(int) 245 => 'Ovary',
(int) 274 => 'Placenta',
(int) 298 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 102,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000350908' => array(
'start' => '114415055',
'end' => '114690100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-001'
),
'ENST00000360232' => array(
'start' => '114426500',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-017'
),
'ENST00000378237' => array(
'start' => '114415319',
'end' => '114645830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-010'
),
'ENST00000390668' => array(
'start' => '114426515',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-016'
),
'ENST00000393489' => array(
'start' => '114415323',
'end' => '114689957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-020'
),
'ENST00000393491' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-201'
),
'ENST00000393494' => array(
'start' => '114414274',
'end' => '114690163',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-014'
),
'ENST00000393495' => array(
'start' => '114415112',
'end' => '114642585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-018'
),
'ENST00000393498' => array(
'start' => '114415058',
'end' => '114690145',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-005'
),
'ENST00000403559' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-202'
),
'ENST00000408937' => array(
'start' => '114414997',
'end' => '114693772',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-004'
),
'ENST00000412402' => array(
'start' => '114086327',
'end' => '114690905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-006'
),
'ENST00000440349' => array(
'start' => '114086439',
'end' => '114631584',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-002'
),
'ENST00000441290' => array(
'start' => '114086560',
'end' => '114669984',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-008'
),
'ENST00000452963' => array(
'start' => '114426502',
'end' => '114630005',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-015'
),
'ENST00000459666' => array(
'start' => '114415220',
'end' => '114628982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-009'
),
'ENST00000462331' => array(
'start' => '114414997',
'end' => '114499728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-007'
),
'ENST00000495516' => array(
'start' => '114088166',
'end' => '114426510',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-011'
),
'ENST00000257724' => array(
'start' => '114922154',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-007'
),
'ENST00000393486' => array(
'start' => '114922359',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-001'
),
'ENST00000423503' => array(
'start' => '114922854',
'end' => '114923658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-002'
),
'ENST00000427207' => array(
'start' => '114923076',
'end' => '114980084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-004'
),
'ENST00000431629' => array(
'start' => '114923064',
'end' => '115015961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MDFIC-005'
),
'ENST00000448022' => array(
'start' => '114922561',
'end' => '114923665',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-003'
),
'ENST00000498196' => array(
'start' => '114933869',
'end' => '115015765',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-006'
),
'ENST00000614186' => array(
'start' => '114922154',
'end' => '115019916',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-201'
),
'ENST00000365464' => array(
'start' => '114613787',
'end' => '114613906',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP238-201'
),
'ENST00000415146' => array(
'start' => '114414244',
'end' => '114419875',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC073626.2-001'
),
'ENST00000449443' => array(
'start' => '114297114',
'end' => '114297429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-95P9.1-001'
),
'ENST00000580664' => array(
'start' => '114629855',
'end' => '114629956',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC020606.1-201'
),
'ENST00000607845' => array(
'start' => '114653345',
'end' => '114653455',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR3666-201'
),
'ENST00000265440' => array(
'start' => '115935148',
'end' => '116030741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-001'
),
'ENST00000320239' => array(
'start' => '115935156',
'end' => '116030813',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-007'
),
'ENST00000393485' => array(
'start' => '115939949',
'end' => '116030744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-002'
),
'ENST00000457268' => array(
'start' => '115935148',
'end' => '115968313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-201'
),
'ENST00000462828' => array(
'start' => '115939949',
'end' => '115950894',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-006'
),
'ENST00000465322' => array(
'start' => '116120190',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-005'
),
'ENST00000474337' => array(
'start' => '116110773',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-004'
),
'ENST00000484212' => array(
'start' => '115941756',
'end' => '116159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-008'
),
'ENST00000497829' => array(
'start' => '115956749',
'end' => '115968313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-009'
),
'ENST00000362354' => array(
'start' => '115833273',
'end' => '115833373',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-209'
),
'ENST00000362894' => array(
'start' => '115207894',
'end' => '115207996',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-272'
),
'ENST00000365507' => array(
'start' => '115581315',
'end' => '115581442',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA25.1-210'
),
'ENST00000419905' => array(
'start' => '115078998',
'end' => '115125791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-002'
),
'ENST00000435981' => array(
'start' => '115078958',
'end' => '115126314',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-001'
),
'ENST00000460471' => array(
'start' => '115118212',
'end' => '115122225',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-003'
),
'ENST00000467677' => array(
'start' => '115079019',
'end' => '115125943',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-004'
),
'ENST00000423911' => array(
'start' => '115136475',
'end' => '115137220',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P6-001'
),
'ENST00000419883' => array(
'start' => '115061537',
'end' => '115231355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01392-001'
),
'ENST00000470532' => array(
'start' => '115679345',
'end' => '115682618',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.2-001'
),
'ENST00000471672' => array(
'start' => '115647461',
'end' => '115676329',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.1-001'
),
'ENST00000489626' => array(
'start' => '115789729',
'end' => '115791049',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.3-001'
),
'ENST00000462471' => array(
'start' => '115503367',
'end' => '115504081',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-222O23.1-001'
),
'ENSMUST00000031533' => array(
'start' => '16833381',
'end' => '16898441',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfec-201'
),
'ENSMUST00000031545' => array(
'start' => '15185506',
'end' => '15441201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-001'
),
'ENSMUST00000115469' => array(
'start' => '15196964',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-017'
),
'ENSMUST00000115470' => array(
'start' => '15184647',
'end' => '15199344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-002'
),
'ENSMUST00000115472' => array(
'start' => '15185506',
'end' => '15438304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-007'
),
'ENSMUST00000115474' => array(
'start' => '15185506',
'end' => '15438023',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-006'
),
'ENSMUST00000115475' => array(
'start' => '15376689',
'end' => '15439048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-015'
),
'ENSMUST00000115477' => array(
'start' => '14901349',
'end' => '15441977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-201'
),
'ENSMUST00000118133' => array(
'start' => '15185449',
'end' => '15255007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-013'
),
'ENSMUST00000128567' => array(
'start' => '14901477',
'end' => '15286770',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-009'
),
'ENSMUST00000131414' => array(
'start' => '15196951',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-020'
),
'ENSMUST00000137628' => array(
'start' => '15185563',
'end' => '15394815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-018'
),
'ENSMUST00000138273' => array(
'start' => '14901478',
'end' => '15287752',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-004'
),
'ENSMUST00000140557' => array(
'start' => '15196951',
'end' => '15379819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-014'
),
'ENSMUST00000151060' => array(
'start' => '14901388',
'end' => '15411938',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-005'
),
'ENSMUST00000151301' => array(
'start' => '15196949',
'end' => '15397843',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-019'
),
'ENSMUST00000152563' => array(
'start' => '15376689',
'end' => '15378088',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-016'
),
'ENSMUST00000154448' => array(
'start' => '15185203',
'end' => '15197075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-012'
),
'ENSMUST00000156883' => array(
'start' => '14903457',
'end' => '15196959',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-011'
),
'ENSMUST00000159788' => array(
'start' => '15254283',
'end' => '15286770',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-021'
),
'ENSMUST00000101663' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-001'
),
'ENSMUST00000120512' => array(
'start' => '15721087',
'end' => '15800808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-004'
),
'ENSMUST00000125326' => array(
'start' => '15720721',
'end' => '15773304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-003'
),
'ENSMUST00000128849' => array(
'start' => '15727799',
'end' => '15770349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-005'
),
'ENSMUST00000140516' => array(
'start' => '15720703',
'end' => '15771235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mdfic-002'
),
'ENSMUST00000189359' => array(
'start' => '15720661',
'end' => '15802169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-201'
),
'ENSMUST00000190255' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-006'
),
'ENSMUST00000119845' => array(
'start' => '16925231',
'end' => '16926926',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5721-001'
),
'ENSMUST00000175576' => array(
'start' => '15404981',
'end' => '15405091',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25470-201'
),
'ENSMUST00000186663' => array(
'start' => '16553905',
'end' => '16554939',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-434O21.1-001'
),
'ENSDART00000060861' => array(
'start' => '5811954',
'end' => '5885940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-201'
),
'ENSDART00000134820' => array(
'start' => '5812306',
'end' => '5956241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-008'
),
'ENSDART00000136572' => array(
'start' => '5825650',
'end' => '5840618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-005'
),
'ENSDART00000138367' => array(
'start' => '5840042',
'end' => '5848749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-004'
),
'ENSDART00000142087' => array(
'start' => '5811927',
'end' => '5956389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-007'
),
'ENSDART00000150774' => array(
'start' => '5954539',
'end' => '5956152',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-009'
),
'ENSDART00000133268' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-002'
),
'ENSDART00000144326' => array(
'start' => '5805164',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-001'
),
'ENSDART00000154021' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-003'
),
'ENSDART00000134376' => array(
'start' => '5799966',
'end' => '5805058',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-262n1.3-001'
),
'ENSDART00000049863' => array(
'start' => '166184',
'end' => '180780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfec-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
'ENSG00000128573' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000236580' => array(
[maximum depth reached]
),
'ENSG00000272230' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Liver',
(int) 2 => 'Kidney',
(int) 3 => 'Lung',
(int) 4 => 'Heart',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Heart',
(int) 25 => 'Muscle',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Muscle'
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
'ENSG00000105967' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000225535' => array(
[maximum depth reached]
),
'ENSG00000226962' => array(
[maximum depth reached]
),
'ENSG00000233607' => array(
[maximum depth reached]
),
'ENSG00000240973' => array(
[maximum depth reached]
),
'ENSG00000243345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Testis',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Adipose',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adrenal',
(int) 78 => 'Breast',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Breast',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Colon',
(int) 93 => 'Kidney',
(int) 94 => 'Lung',
(int) 95 => 'Testis',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Ovary',
(int) 102 => 'Testis'
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000029553' => array(
[maximum depth reached]
),
'ENSMUSG00000029563' => array(
[maximum depth reached]
),
'ENSMUSG00000041390' => array(
[maximum depth reached]
),
'ENSMUSG00000081744' => array(
[maximum depth reached]
),
'ENSMUSG00000093317' => array(
[maximum depth reached]
),
'ENSMUSG00000101034' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Liver',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Adrenal',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Kidney',
(int) 81 => 'Testis',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Colon',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Liver',
(int) 125 => 'Brain',
(int) 126 => 'Liver',
(int) 127 => 'Ovary',
(int) 128 => 'Placenta'
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
'ENSDARG00000005453' => array(
[maximum depth reached]
),
'ENSDARG00000091974' => array(
[maximum depth reached]
),
'ENSDARG00000093020' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Muscle',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Kidney'
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
'ENSDARG00000008423' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000128573' => 'forkhead box P2',
'ENSG00000135272' => 'MyoD family inhibitor domain containing',
'ENSG00000202334' => 'RNA, 5S ribosomal pseudogene 238',
'ENSG00000224595' => null,
'ENSG00000236580' => null,
'ENSG00000266229' => null,
'ENSG00000272230' => 'microRNA 3666',
'ENSG00000105967' => 'transcription factor EC',
'ENSG00000199224' => 'Y RNA',
'ENSG00000199764' => 'Y RNA',
'ENSG00000202377' => 'Small nucleolar RNA SNORA25',
'ENSG00000225535' => 'long intergenic non-protein coding RNA 1393',
'ENSG00000226962' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 6',
'ENSG00000233607' => 'long intergenic non-protein coding RNA 1392',
'ENSG00000240973' => null,
'ENSG00000242072' => null,
'ENSG00000243345' => null,
'ENSG00000244565' => null,
'ENSMUSG00000029553' => 'transcription factor EC',
'ENSMUSG00000029563' => 'forkhead box P2',
'ENSMUSG00000041390' => 'MyoD family inhibitor domain containing',
'ENSMUSG00000081744' => 'predicted gene 5721',
'ENSMUSG00000093317' => 'predicted gene, 25470',
'ENSMUSG00000101034' => 'predicted gene 29589',
'ENSDARG00000005453' => 'forkhead box P2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'transcription factor EC'
)
$gene_name_arr = array(
'ENSG00000128573' => 'FOXP2',
'ENSG00000135272' => 'MDFIC',
'ENSG00000202334' => 'RNA5SP238',
'ENSG00000224595' => 'AC073626.2',
'ENSG00000236580' => 'RP11-95P9.1',
'ENSG00000266229' => 'AC020606.1',
'ENSG00000272230' => 'MIR3666',
'ENSG00000105967' => 'TFEC',
'ENSG00000199224' => 'Y_RNA',
'ENSG00000199764' => 'Y_RNA',
'ENSG00000202377' => 'SNORA25',
'ENSG00000225535' => 'LINC01393',
'ENSG00000226962' => 'RAC1P6',
'ENSG00000233607' => 'LINC01392',
'ENSG00000240973' => 'RP11-458K10.2',
'ENSG00000242072' => 'RP11-458K10.1',
'ENSG00000243345' => 'RP11-458K10.3',
'ENSG00000244565' => 'RP11-222O23.1',
'ENSMUSG00000029553' => 'Tfec',
'ENSMUSG00000029563' => 'Foxp2',
'ENSMUSG00000041390' => 'Mdfic',
'ENSMUSG00000081744' => 'Gm5721',
'ENSMUSG00000093317' => 'Gm25470',
'ENSMUSG00000101034' => 'RP24-434O21.1',
'ENSDARG00000005453' => 'foxp2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'tfec'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '114130894',
'seq_end' => '114986758',
'region_length' => '855864',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '114986759',
'seq_end' => '116135792',
'region_length' => '1149033',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0003',
'tax_id' => '10090',
'chromosome' => '6',
'seq_start' => '14952789',
'seq_end' => '16992593',
'region_length' => '2039804',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0004',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '5774333',
'seq_end' => '5950494',
'region_length' => '176161',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '15557121',
'seq_end' => '15754859',
'region_length' => '197738',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_scaffold3539',
'seq_start' => '145238',
'seq_end' => '276162',
'region_length' => '130924',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 87 => 'Colon',
(int) 109 => 'Heart',
(int) 140 => 'Kidney',
(int) 169 => 'Liver',
(int) 197 => 'Lung',
(int) 219 => 'Muscle',
(int) 245 => 'Ovary',
(int) 274 => 'Placenta',
(int) 298 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 102
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000350908' => array(
'start' => '114415055',
'end' => '114690100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-001'
),
'ENST00000360232' => array(
'start' => '114426500',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-017'
),
'ENST00000378237' => array(
'start' => '114415319',
'end' => '114645830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-010'
),
'ENST00000390668' => array(
'start' => '114426515',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-016'
),
'ENST00000393489' => array(
'start' => '114415323',
'end' => '114689957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-020'
),
'ENST00000393491' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-201'
),
'ENST00000393494' => array(
'start' => '114414274',
'end' => '114690163',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-014'
),
'ENST00000393495' => array(
'start' => '114415112',
'end' => '114642585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-018'
),
'ENST00000393498' => array(
'start' => '114415058',
'end' => '114690145',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-005'
),
'ENST00000403559' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-202'
),
'ENST00000408937' => array(
'start' => '114414997',
'end' => '114693772',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-004'
),
'ENST00000412402' => array(
'start' => '114086327',
'end' => '114690905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-006'
),
'ENST00000440349' => array(
'start' => '114086439',
'end' => '114631584',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-002'
),
'ENST00000441290' => array(
'start' => '114086560',
'end' => '114669984',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-008'
),
'ENST00000452963' => array(
'start' => '114426502',
'end' => '114630005',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-015'
),
'ENST00000459666' => array(
'start' => '114415220',
'end' => '114628982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-009'
),
'ENST00000462331' => array(
'start' => '114414997',
'end' => '114499728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-007'
),
'ENST00000495516' => array(
'start' => '114088166',
'end' => '114426510',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-011'
),
'ENST00000257724' => array(
'start' => '114922154',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-007'
),
'ENST00000393486' => array(
'start' => '114922359',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-001'
),
'ENST00000423503' => array(
'start' => '114922854',
'end' => '114923658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-002'
),
'ENST00000427207' => array(
'start' => '114923076',
'end' => '114980084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-004'
),
'ENST00000431629' => array(
'start' => '114923064',
'end' => '115015961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MDFIC-005'
),
'ENST00000448022' => array(
'start' => '114922561',
'end' => '114923665',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-003'
),
'ENST00000498196' => array(
'start' => '114933869',
'end' => '115015765',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-006'
),
'ENST00000614186' => array(
'start' => '114922154',
'end' => '115019916',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-201'
),
'ENST00000365464' => array(
'start' => '114613787',
'end' => '114613906',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP238-201'
),
'ENST00000415146' => array(
'start' => '114414244',
'end' => '114419875',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC073626.2-001'
),
'ENST00000449443' => array(
'start' => '114297114',
'end' => '114297429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-95P9.1-001'
),
'ENST00000580664' => array(
'start' => '114629855',
'end' => '114629956',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC020606.1-201'
),
'ENST00000607845' => array(
'start' => '114653345',
'end' => '114653455',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR3666-201'
),
'ENST00000265440' => array(
'start' => '115935148',
'end' => '116030741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-001'
),
'ENST00000320239' => array(
'start' => '115935156',
'end' => '116030813',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-007'
),
'ENST00000393485' => array(
'start' => '115939949',
'end' => '116030744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-002'
),
'ENST00000457268' => array(
'start' => '115935148',
'end' => '115968313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-201'
),
'ENST00000462828' => array(
'start' => '115939949',
'end' => '115950894',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-006'
),
'ENST00000465322' => array(
'start' => '116120190',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-005'
),
'ENST00000474337' => array(
'start' => '116110773',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-004'
),
'ENST00000484212' => array(
'start' => '115941756',
'end' => '116159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-008'
),
'ENST00000497829' => array(
'start' => '115956749',
'end' => '115968313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-009'
),
'ENST00000362354' => array(
'start' => '115833273',
'end' => '115833373',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-209'
),
'ENST00000362894' => array(
'start' => '115207894',
'end' => '115207996',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-272'
),
'ENST00000365507' => array(
'start' => '115581315',
'end' => '115581442',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA25.1-210'
),
'ENST00000419905' => array(
'start' => '115078998',
'end' => '115125791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-002'
),
'ENST00000435981' => array(
'start' => '115078958',
'end' => '115126314',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-001'
),
'ENST00000460471' => array(
'start' => '115118212',
'end' => '115122225',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-003'
),
'ENST00000467677' => array(
'start' => '115079019',
'end' => '115125943',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-004'
),
'ENST00000423911' => array(
'start' => '115136475',
'end' => '115137220',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P6-001'
),
'ENST00000419883' => array(
'start' => '115061537',
'end' => '115231355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01392-001'
),
'ENST00000470532' => array(
'start' => '115679345',
'end' => '115682618',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.2-001'
),
'ENST00000471672' => array(
'start' => '115647461',
'end' => '115676329',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.1-001'
),
'ENST00000489626' => array(
'start' => '115789729',
'end' => '115791049',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.3-001'
),
'ENST00000462471' => array(
'start' => '115503367',
'end' => '115504081',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-222O23.1-001'
),
'ENSMUST00000031533' => array(
'start' => '16833381',
'end' => '16898441',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfec-201'
),
'ENSMUST00000031545' => array(
'start' => '15185506',
'end' => '15441201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-001'
),
'ENSMUST00000115469' => array(
'start' => '15196964',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-017'
),
'ENSMUST00000115470' => array(
'start' => '15184647',
'end' => '15199344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-002'
),
'ENSMUST00000115472' => array(
'start' => '15185506',
'end' => '15438304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-007'
),
'ENSMUST00000115474' => array(
'start' => '15185506',
'end' => '15438023',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-006'
),
'ENSMUST00000115475' => array(
'start' => '15376689',
'end' => '15439048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-015'
),
'ENSMUST00000115477' => array(
'start' => '14901349',
'end' => '15441977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-201'
),
'ENSMUST00000118133' => array(
'start' => '15185449',
'end' => '15255007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-013'
),
'ENSMUST00000128567' => array(
'start' => '14901477',
'end' => '15286770',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-009'
),
'ENSMUST00000131414' => array(
'start' => '15196951',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-020'
),
'ENSMUST00000137628' => array(
'start' => '15185563',
'end' => '15394815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-018'
),
'ENSMUST00000138273' => array(
'start' => '14901478',
'end' => '15287752',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-004'
),
'ENSMUST00000140557' => array(
'start' => '15196951',
'end' => '15379819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-014'
),
'ENSMUST00000151060' => array(
'start' => '14901388',
'end' => '15411938',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-005'
),
'ENSMUST00000151301' => array(
'start' => '15196949',
'end' => '15397843',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-019'
),
'ENSMUST00000152563' => array(
'start' => '15376689',
'end' => '15378088',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-016'
),
'ENSMUST00000154448' => array(
'start' => '15185203',
'end' => '15197075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-012'
),
'ENSMUST00000156883' => array(
'start' => '14903457',
'end' => '15196959',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-011'
),
'ENSMUST00000159788' => array(
'start' => '15254283',
'end' => '15286770',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-021'
),
'ENSMUST00000101663' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-001'
),
'ENSMUST00000120512' => array(
'start' => '15721087',
'end' => '15800808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-004'
),
'ENSMUST00000125326' => array(
'start' => '15720721',
'end' => '15773304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-003'
),
'ENSMUST00000128849' => array(
'start' => '15727799',
'end' => '15770349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-005'
),
'ENSMUST00000140516' => array(
'start' => '15720703',
'end' => '15771235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mdfic-002'
),
'ENSMUST00000189359' => array(
'start' => '15720661',
'end' => '15802169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-201'
),
'ENSMUST00000190255' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-006'
),
'ENSMUST00000119845' => array(
'start' => '16925231',
'end' => '16926926',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5721-001'
),
'ENSMUST00000175576' => array(
'start' => '15404981',
'end' => '15405091',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25470-201'
),
'ENSMUST00000186663' => array(
'start' => '16553905',
'end' => '16554939',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-434O21.1-001'
),
'ENSDART00000060861' => array(
'start' => '5811954',
'end' => '5885940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-201'
),
'ENSDART00000134820' => array(
'start' => '5812306',
'end' => '5956241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-008'
),
'ENSDART00000136572' => array(
'start' => '5825650',
'end' => '5840618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-005'
),
'ENSDART00000138367' => array(
'start' => '5840042',
'end' => '5848749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-004'
),
'ENSDART00000142087' => array(
'start' => '5811927',
'end' => '5956389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-007'
),
'ENSDART00000150774' => array(
'start' => '5954539',
'end' => '5956152',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-009'
),
'ENSDART00000133268' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-002'
),
'ENSDART00000144326' => array(
'start' => '5805164',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-001'
),
'ENSDART00000154021' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-003'
),
'ENSDART00000134376' => array(
'start' => '5799966',
'end' => '5805058',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-262n1.3-001'
),
'ENSDART00000049863' => array(
'start' => '166184',
'end' => '180780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfec-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
'ENSG00000128573' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000236580' => array(
[maximum depth reached]
),
'ENSG00000272230' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Liver',
(int) 2 => 'Kidney',
(int) 3 => 'Lung',
(int) 4 => 'Heart',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Heart',
(int) 25 => 'Muscle',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Muscle'
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
'ENSG00000105967' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000225535' => array(
[maximum depth reached]
),
'ENSG00000226962' => array(
[maximum depth reached]
),
'ENSG00000233607' => array(
[maximum depth reached]
),
'ENSG00000240973' => array(
[maximum depth reached]
),
'ENSG00000243345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Testis',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Adipose',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adrenal',
(int) 78 => 'Breast',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Breast',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Colon',
(int) 93 => 'Kidney',
(int) 94 => 'Lung',
(int) 95 => 'Testis',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Ovary',
(int) 102 => 'Testis'
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000029553' => array(
[maximum depth reached]
),
'ENSMUSG00000029563' => array(
[maximum depth reached]
),
'ENSMUSG00000041390' => array(
[maximum depth reached]
),
'ENSMUSG00000081744' => array(
[maximum depth reached]
),
'ENSMUSG00000093317' => array(
[maximum depth reached]
),
'ENSMUSG00000101034' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Liver',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Adrenal',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Kidney',
(int) 81 => 'Testis',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Colon',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Liver',
(int) 125 => 'Brain',
(int) 126 => 'Liver',
(int) 127 => 'Ovary',
(int) 128 => 'Placenta'
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
'ENSDARG00000005453' => array(
[maximum depth reached]
),
'ENSDARG00000091974' => array(
[maximum depth reached]
),
'ENSDARG00000093020' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Muscle',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Kidney'
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
'ENSDARG00000008423' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '15557121',
'seq_end' => '15754859',
'region_length' => '197738',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
)
$gene_el = array(
'ENSDART00000134376' => array(
'Kidney' => array(
'average_FPKM' => '1.644',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000093020'
$is_first = false
$tran_el = array(
'Kidney' => array(
'average_FPKM' => '1.644',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000134376'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000128573' => 'forkhead box P2',
'ENSG00000135272' => 'MyoD family inhibitor domain containing',
'ENSG00000202334' => 'RNA, 5S ribosomal pseudogene 238',
'ENSG00000224595' => null,
'ENSG00000236580' => null,
'ENSG00000266229' => null,
'ENSG00000272230' => 'microRNA 3666',
'ENSG00000105967' => 'transcription factor EC',
'ENSG00000199224' => 'Y RNA',
'ENSG00000199764' => 'Y RNA',
'ENSG00000202377' => 'Small nucleolar RNA SNORA25',
'ENSG00000225535' => 'long intergenic non-protein coding RNA 1393',
'ENSG00000226962' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 6',
'ENSG00000233607' => 'long intergenic non-protein coding RNA 1392',
'ENSG00000240973' => null,
'ENSG00000242072' => null,
'ENSG00000243345' => null,
'ENSG00000244565' => null,
'ENSMUSG00000029553' => 'transcription factor EC',
'ENSMUSG00000029563' => 'forkhead box P2',
'ENSMUSG00000041390' => 'MyoD family inhibitor domain containing',
'ENSMUSG00000081744' => 'predicted gene 5721',
'ENSMUSG00000093317' => 'predicted gene, 25470',
'ENSMUSG00000101034' => 'predicted gene 29589',
'ENSDARG00000005453' => 'forkhead box P2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'transcription factor EC'
),
'gene_name_arr' => array(
'ENSG00000128573' => 'FOXP2',
'ENSG00000135272' => 'MDFIC',
'ENSG00000202334' => 'RNA5SP238',
'ENSG00000224595' => 'AC073626.2',
'ENSG00000236580' => 'RP11-95P9.1',
'ENSG00000266229' => 'AC020606.1',
'ENSG00000272230' => 'MIR3666',
'ENSG00000105967' => 'TFEC',
'ENSG00000199224' => 'Y_RNA',
'ENSG00000199764' => 'Y_RNA',
'ENSG00000202377' => 'SNORA25',
'ENSG00000225535' => 'LINC01393',
'ENSG00000226962' => 'RAC1P6',
'ENSG00000233607' => 'LINC01392',
'ENSG00000240973' => 'RP11-458K10.2',
'ENSG00000242072' => 'RP11-458K10.1',
'ENSG00000243345' => 'RP11-458K10.3',
'ENSG00000244565' => 'RP11-222O23.1',
'ENSMUSG00000029553' => 'Tfec',
'ENSMUSG00000029563' => 'Foxp2',
'ENSMUSG00000041390' => 'Mdfic',
'ENSMUSG00000081744' => 'Gm5721',
'ENSMUSG00000093317' => 'Gm25470',
'ENSMUSG00000101034' => 'RP24-434O21.1',
'ENSDARG00000005453' => 'foxp2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'tfec'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 87 => 'Colon',
(int) 109 => 'Heart',
(int) 140 => 'Kidney',
(int) 169 => 'Liver',
(int) 197 => 'Lung',
(int) 219 => 'Muscle',
(int) 245 => 'Ovary',
(int) 274 => 'Placenta',
(int) 298 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 102,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000350908' => array(
'start' => '114415055',
'end' => '114690100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-001'
),
'ENST00000360232' => array(
'start' => '114426500',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-017'
),
'ENST00000378237' => array(
'start' => '114415319',
'end' => '114645830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-010'
),
'ENST00000390668' => array(
'start' => '114426515',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-016'
),
'ENST00000393489' => array(
'start' => '114415323',
'end' => '114689957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-020'
),
'ENST00000393491' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-201'
),
'ENST00000393494' => array(
'start' => '114414274',
'end' => '114690163',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-014'
),
'ENST00000393495' => array(
'start' => '114415112',
'end' => '114642585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-018'
),
'ENST00000393498' => array(
'start' => '114415058',
'end' => '114690145',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-005'
),
'ENST00000403559' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-202'
),
'ENST00000408937' => array(
'start' => '114414997',
'end' => '114693772',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-004'
),
'ENST00000412402' => array(
'start' => '114086327',
'end' => '114690905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-006'
),
'ENST00000440349' => array(
'start' => '114086439',
'end' => '114631584',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-002'
),
'ENST00000441290' => array(
'start' => '114086560',
'end' => '114669984',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-008'
),
'ENST00000452963' => array(
'start' => '114426502',
'end' => '114630005',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-015'
),
'ENST00000459666' => array(
'start' => '114415220',
'end' => '114628982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-009'
),
'ENST00000462331' => array(
'start' => '114414997',
'end' => '114499728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-007'
),
'ENST00000495516' => array(
'start' => '114088166',
'end' => '114426510',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-011'
),
'ENST00000257724' => array(
'start' => '114922154',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-007'
),
'ENST00000393486' => array(
'start' => '114922359',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-001'
),
'ENST00000423503' => array(
'start' => '114922854',
'end' => '114923658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-002'
),
'ENST00000427207' => array(
'start' => '114923076',
'end' => '114980084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-004'
),
'ENST00000431629' => array(
'start' => '114923064',
'end' => '115015961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MDFIC-005'
),
'ENST00000448022' => array(
'start' => '114922561',
'end' => '114923665',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-003'
),
'ENST00000498196' => array(
'start' => '114933869',
'end' => '115015765',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-006'
),
'ENST00000614186' => array(
'start' => '114922154',
'end' => '115019916',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-201'
),
'ENST00000365464' => array(
'start' => '114613787',
'end' => '114613906',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP238-201'
),
'ENST00000415146' => array(
'start' => '114414244',
'end' => '114419875',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC073626.2-001'
),
'ENST00000449443' => array(
'start' => '114297114',
'end' => '114297429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-95P9.1-001'
),
'ENST00000580664' => array(
'start' => '114629855',
'end' => '114629956',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC020606.1-201'
),
'ENST00000607845' => array(
'start' => '114653345',
'end' => '114653455',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR3666-201'
),
'ENST00000265440' => array(
'start' => '115935148',
'end' => '116030741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-001'
),
'ENST00000320239' => array(
'start' => '115935156',
'end' => '116030813',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-007'
),
'ENST00000393485' => array(
'start' => '115939949',
'end' => '116030744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-002'
),
'ENST00000457268' => array(
'start' => '115935148',
'end' => '115968313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-201'
),
'ENST00000462828' => array(
'start' => '115939949',
'end' => '115950894',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-006'
),
'ENST00000465322' => array(
'start' => '116120190',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-005'
),
'ENST00000474337' => array(
'start' => '116110773',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-004'
),
'ENST00000484212' => array(
'start' => '115941756',
'end' => '116159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-008'
),
'ENST00000497829' => array(
'start' => '115956749',
'end' => '115968313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-009'
),
'ENST00000362354' => array(
'start' => '115833273',
'end' => '115833373',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-209'
),
'ENST00000362894' => array(
'start' => '115207894',
'end' => '115207996',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-272'
),
'ENST00000365507' => array(
'start' => '115581315',
'end' => '115581442',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA25.1-210'
),
'ENST00000419905' => array(
'start' => '115078998',
'end' => '115125791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-002'
),
'ENST00000435981' => array(
'start' => '115078958',
'end' => '115126314',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-001'
),
'ENST00000460471' => array(
'start' => '115118212',
'end' => '115122225',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-003'
),
'ENST00000467677' => array(
'start' => '115079019',
'end' => '115125943',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-004'
),
'ENST00000423911' => array(
'start' => '115136475',
'end' => '115137220',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P6-001'
),
'ENST00000419883' => array(
'start' => '115061537',
'end' => '115231355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01392-001'
),
'ENST00000470532' => array(
'start' => '115679345',
'end' => '115682618',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.2-001'
),
'ENST00000471672' => array(
'start' => '115647461',
'end' => '115676329',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.1-001'
),
'ENST00000489626' => array(
'start' => '115789729',
'end' => '115791049',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.3-001'
),
'ENST00000462471' => array(
'start' => '115503367',
'end' => '115504081',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-222O23.1-001'
),
'ENSMUST00000031533' => array(
'start' => '16833381',
'end' => '16898441',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfec-201'
),
'ENSMUST00000031545' => array(
'start' => '15185506',
'end' => '15441201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-001'
),
'ENSMUST00000115469' => array(
'start' => '15196964',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-017'
),
'ENSMUST00000115470' => array(
'start' => '15184647',
'end' => '15199344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-002'
),
'ENSMUST00000115472' => array(
'start' => '15185506',
'end' => '15438304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-007'
),
'ENSMUST00000115474' => array(
'start' => '15185506',
'end' => '15438023',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-006'
),
'ENSMUST00000115475' => array(
'start' => '15376689',
'end' => '15439048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-015'
),
'ENSMUST00000115477' => array(
'start' => '14901349',
'end' => '15441977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-201'
),
'ENSMUST00000118133' => array(
'start' => '15185449',
'end' => '15255007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-013'
),
'ENSMUST00000128567' => array(
'start' => '14901477',
'end' => '15286770',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-009'
),
'ENSMUST00000131414' => array(
'start' => '15196951',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-020'
),
'ENSMUST00000137628' => array(
'start' => '15185563',
'end' => '15394815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-018'
),
'ENSMUST00000138273' => array(
'start' => '14901478',
'end' => '15287752',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-004'
),
'ENSMUST00000140557' => array(
'start' => '15196951',
'end' => '15379819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-014'
),
'ENSMUST00000151060' => array(
'start' => '14901388',
'end' => '15411938',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-005'
),
'ENSMUST00000151301' => array(
'start' => '15196949',
'end' => '15397843',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-019'
),
'ENSMUST00000152563' => array(
'start' => '15376689',
'end' => '15378088',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-016'
),
'ENSMUST00000154448' => array(
'start' => '15185203',
'end' => '15197075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-012'
),
'ENSMUST00000156883' => array(
'start' => '14903457',
'end' => '15196959',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-011'
),
'ENSMUST00000159788' => array(
'start' => '15254283',
'end' => '15286770',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-021'
),
'ENSMUST00000101663' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-001'
),
'ENSMUST00000120512' => array(
'start' => '15721087',
'end' => '15800808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-004'
),
'ENSMUST00000125326' => array(
'start' => '15720721',
'end' => '15773304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-003'
),
'ENSMUST00000128849' => array(
'start' => '15727799',
'end' => '15770349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-005'
),
'ENSMUST00000140516' => array(
'start' => '15720703',
'end' => '15771235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mdfic-002'
),
'ENSMUST00000189359' => array(
'start' => '15720661',
'end' => '15802169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-201'
),
'ENSMUST00000190255' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-006'
),
'ENSMUST00000119845' => array(
'start' => '16925231',
'end' => '16926926',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5721-001'
),
'ENSMUST00000175576' => array(
'start' => '15404981',
'end' => '15405091',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25470-201'
),
'ENSMUST00000186663' => array(
'start' => '16553905',
'end' => '16554939',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-434O21.1-001'
),
'ENSDART00000060861' => array(
'start' => '5811954',
'end' => '5885940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-201'
),
'ENSDART00000134820' => array(
'start' => '5812306',
'end' => '5956241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-008'
),
'ENSDART00000136572' => array(
'start' => '5825650',
'end' => '5840618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-005'
),
'ENSDART00000138367' => array(
'start' => '5840042',
'end' => '5848749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-004'
),
'ENSDART00000142087' => array(
'start' => '5811927',
'end' => '5956389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-007'
),
'ENSDART00000150774' => array(
'start' => '5954539',
'end' => '5956152',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-009'
),
'ENSDART00000133268' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-002'
),
'ENSDART00000144326' => array(
'start' => '5805164',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-001'
),
'ENSDART00000154021' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-003'
),
'ENSDART00000134376' => array(
'start' => '5799966',
'end' => '5805058',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-262n1.3-001'
),
'ENSDART00000049863' => array(
'start' => '166184',
'end' => '180780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfec-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
'ENSG00000128573' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000236580' => array(
[maximum depth reached]
),
'ENSG00000272230' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Liver',
(int) 2 => 'Kidney',
(int) 3 => 'Lung',
(int) 4 => 'Heart',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Heart',
(int) 25 => 'Muscle',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Muscle'
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
'ENSG00000105967' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000225535' => array(
[maximum depth reached]
),
'ENSG00000226962' => array(
[maximum depth reached]
),
'ENSG00000233607' => array(
[maximum depth reached]
),
'ENSG00000240973' => array(
[maximum depth reached]
),
'ENSG00000243345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Testis',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Adipose',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adrenal',
(int) 78 => 'Breast',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Breast',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Colon',
(int) 93 => 'Kidney',
(int) 94 => 'Lung',
(int) 95 => 'Testis',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Ovary',
(int) 102 => 'Testis'
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000029553' => array(
[maximum depth reached]
),
'ENSMUSG00000029563' => array(
[maximum depth reached]
),
'ENSMUSG00000041390' => array(
[maximum depth reached]
),
'ENSMUSG00000081744' => array(
[maximum depth reached]
),
'ENSMUSG00000093317' => array(
[maximum depth reached]
),
'ENSMUSG00000101034' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Liver',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Adrenal',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Kidney',
(int) 81 => 'Testis',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Colon',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Liver',
(int) 125 => 'Brain',
(int) 126 => 'Liver',
(int) 127 => 'Ovary',
(int) 128 => 'Placenta'
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
'ENSDARG00000005453' => array(
[maximum depth reached]
),
'ENSDARG00000091974' => array(
[maximum depth reached]
),
'ENSDARG00000093020' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Muscle',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Kidney'
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
'ENSDARG00000008423' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000128573' => 'forkhead box P2',
'ENSG00000135272' => 'MyoD family inhibitor domain containing',
'ENSG00000202334' => 'RNA, 5S ribosomal pseudogene 238',
'ENSG00000224595' => null,
'ENSG00000236580' => null,
'ENSG00000266229' => null,
'ENSG00000272230' => 'microRNA 3666',
'ENSG00000105967' => 'transcription factor EC',
'ENSG00000199224' => 'Y RNA',
'ENSG00000199764' => 'Y RNA',
'ENSG00000202377' => 'Small nucleolar RNA SNORA25',
'ENSG00000225535' => 'long intergenic non-protein coding RNA 1393',
'ENSG00000226962' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 6',
'ENSG00000233607' => 'long intergenic non-protein coding RNA 1392',
'ENSG00000240973' => null,
'ENSG00000242072' => null,
'ENSG00000243345' => null,
'ENSG00000244565' => null,
'ENSMUSG00000029553' => 'transcription factor EC',
'ENSMUSG00000029563' => 'forkhead box P2',
'ENSMUSG00000041390' => 'MyoD family inhibitor domain containing',
'ENSMUSG00000081744' => 'predicted gene 5721',
'ENSMUSG00000093317' => 'predicted gene, 25470',
'ENSMUSG00000101034' => 'predicted gene 29589',
'ENSDARG00000005453' => 'forkhead box P2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'transcription factor EC'
)
$gene_name_arr = array(
'ENSG00000128573' => 'FOXP2',
'ENSG00000135272' => 'MDFIC',
'ENSG00000202334' => 'RNA5SP238',
'ENSG00000224595' => 'AC073626.2',
'ENSG00000236580' => 'RP11-95P9.1',
'ENSG00000266229' => 'AC020606.1',
'ENSG00000272230' => 'MIR3666',
'ENSG00000105967' => 'TFEC',
'ENSG00000199224' => 'Y_RNA',
'ENSG00000199764' => 'Y_RNA',
'ENSG00000202377' => 'SNORA25',
'ENSG00000225535' => 'LINC01393',
'ENSG00000226962' => 'RAC1P6',
'ENSG00000233607' => 'LINC01392',
'ENSG00000240973' => 'RP11-458K10.2',
'ENSG00000242072' => 'RP11-458K10.1',
'ENSG00000243345' => 'RP11-458K10.3',
'ENSG00000244565' => 'RP11-222O23.1',
'ENSMUSG00000029553' => 'Tfec',
'ENSMUSG00000029563' => 'Foxp2',
'ENSMUSG00000041390' => 'Mdfic',
'ENSMUSG00000081744' => 'Gm5721',
'ENSMUSG00000093317' => 'Gm25470',
'ENSMUSG00000101034' => 'RP24-434O21.1',
'ENSDARG00000005453' => 'foxp2',
'ENSDARG00000091974' => 'si:ch211-262n1.5',
'ENSDARG00000093020' => 'si:ch211-262n1.3',
'ENSDARG00000008423' => 'tfec'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '114130894',
'seq_end' => '114986758',
'region_length' => '855864',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '114986759',
'seq_end' => '116135792',
'region_length' => '1149033',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0003',
'tax_id' => '10090',
'chromosome' => '6',
'seq_start' => '14952789',
'seq_end' => '16992593',
'region_length' => '2039804',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0004',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '5774333',
'seq_end' => '5950494',
'region_length' => '176161',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '15557121',
'seq_end' => '15754859',
'region_length' => '197738',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_scaffold3539',
'seq_start' => '145238',
'seq_end' => '276162',
'region_length' => '130924',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 87 => 'Colon',
(int) 109 => 'Heart',
(int) 140 => 'Kidney',
(int) 169 => 'Liver',
(int) 197 => 'Lung',
(int) 219 => 'Muscle',
(int) 245 => 'Ovary',
(int) 274 => 'Placenta',
(int) 298 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 102
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000350908' => array(
'start' => '114415055',
'end' => '114690100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-001'
),
'ENST00000360232' => array(
'start' => '114426500',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-017'
),
'ENST00000378237' => array(
'start' => '114415319',
'end' => '114645830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-010'
),
'ENST00000390668' => array(
'start' => '114426515',
'end' => '114654143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-016'
),
'ENST00000393489' => array(
'start' => '114415323',
'end' => '114689957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-020'
),
'ENST00000393491' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-201'
),
'ENST00000393494' => array(
'start' => '114414274',
'end' => '114690163',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-014'
),
'ENST00000393495' => array(
'start' => '114415112',
'end' => '114642585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-018'
),
'ENST00000393498' => array(
'start' => '114415058',
'end' => '114690145',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-005'
),
'ENST00000403559' => array(
'start' => '114414997',
'end' => '114693768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-202'
),
'ENST00000408937' => array(
'start' => '114414997',
'end' => '114693772',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-004'
),
'ENST00000412402' => array(
'start' => '114086327',
'end' => '114690905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-006'
),
'ENST00000440349' => array(
'start' => '114086439',
'end' => '114631584',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-002'
),
'ENST00000441290' => array(
'start' => '114086560',
'end' => '114669984',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FOXP2-008'
),
'ENST00000452963' => array(
'start' => '114426502',
'end' => '114630005',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-015'
),
'ENST00000459666' => array(
'start' => '114415220',
'end' => '114628982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-009'
),
'ENST00000462331' => array(
'start' => '114414997',
'end' => '114499728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXP2-007'
),
'ENST00000495516' => array(
'start' => '114088166',
'end' => '114426510',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FOXP2-011'
),
'ENST00000257724' => array(
'start' => '114922154',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-007'
),
'ENST00000393486' => array(
'start' => '114922359',
'end' => '115019202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-001'
),
'ENST00000423503' => array(
'start' => '114922854',
'end' => '114923658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-002'
),
'ENST00000427207' => array(
'start' => '114923076',
'end' => '114980084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-004'
),
'ENST00000431629' => array(
'start' => '114923064',
'end' => '115015961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MDFIC-005'
),
'ENST00000448022' => array(
'start' => '114922561',
'end' => '114923665',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-003'
),
'ENST00000498196' => array(
'start' => '114933869',
'end' => '115015765',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-006'
),
'ENST00000614186' => array(
'start' => '114922154',
'end' => '115019916',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MDFIC-201'
),
'ENST00000365464' => array(
'start' => '114613787',
'end' => '114613906',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP238-201'
),
'ENST00000415146' => array(
'start' => '114414244',
'end' => '114419875',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC073626.2-001'
),
'ENST00000449443' => array(
'start' => '114297114',
'end' => '114297429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-95P9.1-001'
),
'ENST00000580664' => array(
'start' => '114629855',
'end' => '114629956',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC020606.1-201'
),
'ENST00000607845' => array(
'start' => '114653345',
'end' => '114653455',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR3666-201'
),
'ENST00000265440' => array(
'start' => '115935148',
'end' => '116030741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-001'
),
'ENST00000320239' => array(
'start' => '115935156',
'end' => '116030813',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-007'
),
'ENST00000393485' => array(
'start' => '115939949',
'end' => '116030744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-002'
),
'ENST00000457268' => array(
'start' => '115935148',
'end' => '115968313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-201'
),
'ENST00000462828' => array(
'start' => '115939949',
'end' => '115950894',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-006'
),
'ENST00000465322' => array(
'start' => '116120190',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-005'
),
'ENST00000474337' => array(
'start' => '116110773',
'end' => '116159895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-004'
),
'ENST00000484212' => array(
'start' => '115941756',
'end' => '116159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFEC-008'
),
'ENST00000497829' => array(
'start' => '115956749',
'end' => '115968313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFEC-009'
),
'ENST00000362354' => array(
'start' => '115833273',
'end' => '115833373',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-209'
),
'ENST00000362894' => array(
'start' => '115207894',
'end' => '115207996',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-272'
),
'ENST00000365507' => array(
'start' => '115581315',
'end' => '115581442',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA25.1-210'
),
'ENST00000419905' => array(
'start' => '115078998',
'end' => '115125791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-002'
),
'ENST00000435981' => array(
'start' => '115078958',
'end' => '115126314',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-001'
),
'ENST00000460471' => array(
'start' => '115118212',
'end' => '115122225',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-003'
),
'ENST00000467677' => array(
'start' => '115079019',
'end' => '115125943',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01393-004'
),
'ENST00000423911' => array(
'start' => '115136475',
'end' => '115137220',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P6-001'
),
'ENST00000419883' => array(
'start' => '115061537',
'end' => '115231355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01392-001'
),
'ENST00000470532' => array(
'start' => '115679345',
'end' => '115682618',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.2-001'
),
'ENST00000471672' => array(
'start' => '115647461',
'end' => '115676329',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.1-001'
),
'ENST00000489626' => array(
'start' => '115789729',
'end' => '115791049',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-458K10.3-001'
),
'ENST00000462471' => array(
'start' => '115503367',
'end' => '115504081',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-222O23.1-001'
),
'ENSMUST00000031533' => array(
'start' => '16833381',
'end' => '16898441',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfec-201'
),
'ENSMUST00000031545' => array(
'start' => '15185506',
'end' => '15441201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-001'
),
'ENSMUST00000115469' => array(
'start' => '15196964',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-017'
),
'ENSMUST00000115470' => array(
'start' => '15184647',
'end' => '15199344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-002'
),
'ENSMUST00000115472' => array(
'start' => '15185506',
'end' => '15438304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-007'
),
'ENSMUST00000115474' => array(
'start' => '15185506',
'end' => '15438023',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-006'
),
'ENSMUST00000115475' => array(
'start' => '15376689',
'end' => '15439048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-015'
),
'ENSMUST00000115477' => array(
'start' => '14901349',
'end' => '15441977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-201'
),
'ENSMUST00000118133' => array(
'start' => '15185449',
'end' => '15255007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-013'
),
'ENSMUST00000128567' => array(
'start' => '14901477',
'end' => '15286770',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-009'
),
'ENSMUST00000131414' => array(
'start' => '15196951',
'end' => '15405675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-020'
),
'ENSMUST00000137628' => array(
'start' => '15185563',
'end' => '15394815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-018'
),
'ENSMUST00000138273' => array(
'start' => '14901478',
'end' => '15287752',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-004'
),
'ENSMUST00000140557' => array(
'start' => '15196951',
'end' => '15379819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-014'
),
'ENSMUST00000151060' => array(
'start' => '14901388',
'end' => '15411938',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Foxp2-005'
),
'ENSMUST00000151301' => array(
'start' => '15196949',
'end' => '15397843',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-019'
),
'ENSMUST00000152563' => array(
'start' => '15376689',
'end' => '15378088',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Foxp2-016'
),
'ENSMUST00000154448' => array(
'start' => '15185203',
'end' => '15197075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxp2-012'
),
'ENSMUST00000156883' => array(
'start' => '14903457',
'end' => '15196959',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-011'
),
'ENSMUST00000159788' => array(
'start' => '15254283',
'end' => '15286770',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Foxp2-021'
),
'ENSMUST00000101663' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-001'
),
'ENSMUST00000120512' => array(
'start' => '15721087',
'end' => '15800808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-004'
),
'ENSMUST00000125326' => array(
'start' => '15720721',
'end' => '15773304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-003'
),
'ENSMUST00000128849' => array(
'start' => '15727799',
'end' => '15770349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-005'
),
'ENSMUST00000140516' => array(
'start' => '15720703',
'end' => '15771235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mdfic-002'
),
'ENSMUST00000189359' => array(
'start' => '15720661',
'end' => '15802169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-201'
),
'ENSMUST00000190255' => array(
'start' => '15720661',
'end' => '15802165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mdfic-006'
),
'ENSMUST00000119845' => array(
'start' => '16925231',
'end' => '16926926',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5721-001'
),
'ENSMUST00000175576' => array(
'start' => '15404981',
'end' => '15405091',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25470-201'
),
'ENSMUST00000186663' => array(
'start' => '16553905',
'end' => '16554939',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-434O21.1-001'
),
'ENSDART00000060861' => array(
'start' => '5811954',
'end' => '5885940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-201'
),
'ENSDART00000134820' => array(
'start' => '5812306',
'end' => '5956241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-008'
),
'ENSDART00000136572' => array(
'start' => '5825650',
'end' => '5840618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-005'
),
'ENSDART00000138367' => array(
'start' => '5840042',
'end' => '5848749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-004'
),
'ENSDART00000142087' => array(
'start' => '5811927',
'end' => '5956389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxp2-007'
),
'ENSDART00000150774' => array(
'start' => '5954539',
'end' => '5956152',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'foxp2-009'
),
'ENSDART00000133268' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-002'
),
'ENSDART00000144326' => array(
'start' => '5805164',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-001'
),
'ENSDART00000154021' => array(
'start' => '5895169',
'end' => '5897517',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-262n1.5-003'
),
'ENSDART00000134376' => array(
'start' => '5799966',
'end' => '5805058',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-262n1.3-001'
),
'ENSDART00000049863' => array(
'start' => '166184',
'end' => '180780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfec-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007K6_0001' => array(
'genes_in_region' => array(
'ENSG00000128573' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000236580' => array(
[maximum depth reached]
),
'ENSG00000272230' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Liver',
(int) 2 => 'Kidney',
(int) 3 => 'Lung',
(int) 4 => 'Heart',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Heart',
(int) 25 => 'Muscle',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Muscle'
)
),
'CIL_0007K6_0002' => array(
'genes_in_region' => array(
'ENSG00000105967' => array(
[maximum depth reached]
),
'ENSG00000135272' => array(
[maximum depth reached]
),
'ENSG00000225535' => array(
[maximum depth reached]
),
'ENSG00000226962' => array(
[maximum depth reached]
),
'ENSG00000233607' => array(
[maximum depth reached]
),
'ENSG00000240973' => array(
[maximum depth reached]
),
'ENSG00000243345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Testis',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Adipose',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adrenal',
(int) 78 => 'Breast',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Breast',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Colon',
(int) 93 => 'Kidney',
(int) 94 => 'Lung',
(int) 95 => 'Testis',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Ovary',
(int) 102 => 'Testis'
)
),
'CIL_0007K6_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000029553' => array(
[maximum depth reached]
),
'ENSMUSG00000029563' => array(
[maximum depth reached]
),
'ENSMUSG00000041390' => array(
[maximum depth reached]
),
'ENSMUSG00000081744' => array(
[maximum depth reached]
),
'ENSMUSG00000093317' => array(
[maximum depth reached]
),
'ENSMUSG00000101034' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Liver',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Adrenal',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Kidney',
(int) 81 => 'Testis',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Colon',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Liver',
(int) 125 => 'Brain',
(int) 126 => 'Liver',
(int) 127 => 'Ovary',
(int) 128 => 'Placenta'
)
),
'CIL_0007K6_0004' => array(
'genes_in_region' => array(
'ENSDARG00000005453' => array(
[maximum depth reached]
),
'ENSDARG00000091974' => array(
[maximum depth reached]
),
'ENSDARG00000093020' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Muscle',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Kidney'
)
),
'CIL_0007K6_0006' => array(
'genes_in_region' => array(
'ENSDARG00000008423' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007K6_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '15557121',
'seq_end' => '15754859',
'region_length' => '197738',
'region_type' => 'UCNEbase',
'el_id' => 'FOXP2'
)
)
$gene_el = array(
'ENSDART00000134376' => array(
'Kidney' => array(
'average_FPKM' => '1.644',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000093020'
$is_first = false
$tran_el = array(
'Kidney' => array(
'average_FPKM' => '1.644',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000134376'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(FOXP2)