C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453156 NPM1P9-001 ENSG00000231066 9606 - X:14834476-14835319 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000453156
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000453156 0.013±0.00 0.054±0.00 0.048±0.00 0.331±0.00 0.024±0.00 0.012±0.00 0.026±0.00 0.063±0.00 0.132±0.12 0.024±0.00 0.078±0.05 0.090±0.05 0.102±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U1 CIL_0002U1_0002 CGP X:14529298-14873069

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 859
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 819
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 704
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 702
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 527
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 4e-36 156

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