C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455029 RRBP1-007 ENSG00000125844 9606 - 20:17614128-17682060 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000455029
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000455029 17.170±0.00 23.023±0.00 12.788±7.31 7.707±3.26 8.754±0.00 1.846±0.00 17.341±0.00 58.368±48.12 108.184±0.00 23.448±7.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002D9 CIL_0002D9_0001 CGP 20:17569863-17682295
CIL_0002DA CIL_0002DA_0001 CGP 20:17613678-17735871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016072 Rrbp1-002 protein_coding Mus_musculus 0 2316
ENSMUST00000136068 Rrbp1-005 processed_transcript Mus_musculus 0 929
ENSMUST00000140511 Rrbp1-007 processed_transcript Mus_musculus 0 542
ENSMUST00000154649 Rrbp1-003 processed_transcript Mus_musculus 0 538
ENSMUST00000135367 Rrbp1-008 processed_transcript Mus_musculus 0 300
ENSMUST00000155539 Rrbp1-006 processed_transcript Mus_musculus 0 207

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