C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008A1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm164 VISTA 9606 1:117312950-117913675
GeneTranscriptPositionBiotype
ENSG00000183508 (FAM46C)
family with sequence similarity 46, member C 		ENST00000369448 (FAM46C-001) 117605934-117628372 protein_coding
ENSG00000196505 (GDAP2)
ganglioside induced differentiation associated protein 2 		ENST00000369442 (GDAP2-002) 117877222-117929583 protein_coding
ENST00000369443 (GDAP2-001) 117863485-117929630 protein_coding
ENST00000464026 (GDAP2-006) 117882904-117899130 processed_transcript
ENST00000491626 (GDAP2-005) 117870184-117887733 processed_transcript
ENST00000493555 (GDAP2-004) 117896616-117920207 processed_transcript
ENST00000494224 (GDAP2-003) 117912530-117929560 processed_transcript
ENSG00000198162 (MAN1A2)
mannosidase, alpha, class 1A, member 2 		ENST00000356554 (MAN1A2-001) 117367449-117528872 protein_coding
ENST00000421535 (MAN1A2-004) 117496780-117523322 protein_coding
ENST00000422329 (MAN1A2-005) 117502861-117525352 protein_coding
ENST00000449370 (MAN1A2-002) 117420597-117515939 protein_coding
ENST00000482811 (MAN1A2-003) 117367943-117420630 processed_transcript
ENSG00000213262 (AL365331.2)
 ENST00000430995 (AL365331.2-001) 117640812-117641639 processed_pseudogene
ENSG00000226755 (VPS25P1)
VPS25 pseudogene 1 		ENST00000455691 (VPS25P1-001) 117549415-117549922 processed_pseudogene
ENSG00000228217 (AL390877.1)
 ENST00000423940 (AL390877.1-001) 117778087-117778506 processed_pseudogene
ENSG00000235202 (LINC01525)
long intergenic non-protein coding RNA 1525 		ENST00000442182 (LINC01525-001) 117295520-117321336 lincRNA
ENSG00000236866 (AL157902.3)
 ENST00000425010 (AL157902.3-002) 117603999-117605770 antisense
ENST00000440801 (AL157902.3-001) 117596832-117605711 antisense
ENST00000456126 (AL157902.3-003) 117604624-117605685 antisense
ENSG00000270719 (RP11-134N8.2)
 ENST00000605704 (RP11-134N8.2-001) 117700029-117700242 processed_pseudogene
ENSG00000271427 (RP11-188D8.1)
 ENST00000604156 (RP11-188D8.1-001) 117364899-117365473 lincRNA
ENSG00000279513 (RP4-675C20.4)
 ENST00000623435 (RP4-675C20.4-001) 117493515-117495006 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008A1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm164 VISTA 10090 3:100182353-100782938
GeneTranscriptPositionBiotype
ENSMUSG00000008763 (Man1a2)
mannosidase, alpha, class 1A, member 2 		ENSMUST00000008907 (Man1a2-001) 100562208-100685503 protein_coding
ENSMUST00000123442 (Man1a2-003) 100656061-100685308 processed_transcript
ENSMUST00000130066 (Man1a2-006) 100620033-100684613 protein_coding
ENSMUST00000133642 (Man1a2-004) 100587910-100652592 processed_transcript
ENSMUST00000146818 (Man1a2-002) 100684594-100685459 processed_transcript
ENSMUSG00000027865 (Gdap2)
ganglioside-induced differentiation-associated-protein 2 		ENSMUST00000029459 (Gdap2-001) 100162381-100206981 protein_coding
ENSMUST00000106997 (Gdap2-002) 100162518-100202470 protein_coding
ENSMUST00000150223 (Gdap2-003) 100162544-100169997 processed_transcript
ENSMUSG00000044468 (Fam46c)
family with sequence similarity 46, member C 		ENSMUST00000061455 (Fam46c-001) 100468057-100489324 protein_coding
ENSMUST00000128107 (Fam46c-003) 100451628-100489198 processed_transcript
ENSMUST00000139833 (Fam46c-002) 100451631-100489194 processed_transcript
ENSMUSG00000053957 (Gm12474)
predicted gene 12474 		ENSMUST00000122898 (Gm12474-001) 100489664-100523920 lincRNA
ENSMUSG00000081440 (Gm12464)
predicted gene 12464 		ENSMUST00000121385 (Gm12464-001) 100413560-100414575 processed_pseudogene
ENSMUSG00000083842 (Gm12485)
predicted gene 12485 		ENSMUST00000119641 (Gm12485-001) 100680265-100680555 processed_pseudogene
ENSMUSG00000086923 (4930406D18Rik)
RIKEN cDNA 4930406D18 gene 		ENSMUST00000147951 (4930406D18Rik-002) 100426405-100428865 lincRNA
ENSMUST00000152827 (4930406D18Rik-001) 100426439-100437754 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008A1_0001ENSG00000183508ENST00000369448ENSG00000196505ENST00000369442ENST00000369443ENST00000464026ENST00000491626ENST00000493555ENST00000494224ENSG00000198162ENST00000356554ENST00000421535ENST00000422329ENST00000449370ENST00000482811ENSG00000213262ENST00000430995ENSG00000226755ENST00000455691ENSG00000228217ENST00000423940ENSG00000235202ENST00000442182ENSG00000236866ENST00000425010ENST00000440801ENST00000456126ENSG00000270719ENST00000605704ENSG00000271427ENST00000604156ENSG00000279513ENST00000623435CIL_0008A1_0002ENSMUSG00000008763ENSMUST00000008907ENSMUST00000123442ENSMUST00000130066ENSMUST00000133642ENSMUST00000146818ENSMUSG00000027865ENSMUST00000029459ENSMUST00000106997ENSMUST00000150223ENSMUSG00000044468ENSMUST00000061455ENSMUST00000128107ENSMUST00000139833ENSMUSG00000053957ENSMUST00000122898ENSMUSG00000081440ENSMUST00000121385ENSMUSG00000083842ENSMUST00000119641ENSMUSG00000086923ENSMUST00000147951ENSMUST00000152827
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008A1_0001ENSG00000183508ENST00000369448ENSG00000196505ENST00000369442ENST00000369443ENST00000491626ENST00000493555ENSG00000198162ENST00000356554ENSG00000213262ENST00000430995ENSG00000226755ENST00000455691ENSG00000228217ENST00000423940ENSG00000235202ENST00000442182ENSG00000236866ENST00000425010ENST00000440801ENST00000456126ENSG00000270719ENST00000605704ENSG00000271427ENST00000604156ENSG00000279513ENST00000623435CIL_0008A1_0002ENSMUSG00000008763ENSMUST00000008907ENSMUST00000123442ENSMUST00000130066ENSMUST00000146818ENSMUSG00000027865ENSMUST00000029459ENSMUSG00000044468ENSMUST00000061455ENSMUSG00000053957ENSMUST00000122898ENSMUSG00000081440ENSMUST00000121385ENSMUSG00000083842ENSMUST00000119641ENSMUSG00000086923ENSMUST00000147951ENSMUST00000152827
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183508 ENST00000369448 0.871±0.00 5.892±0.00 1.862±0.00 0.109±0.10 3.493±1.41 5.818±2.11 1.391±0.35 2.700±1.60 2.231±0.01 5.169±2.86 4.603±3.45 3.665±1.89 1.785±1.05 22.821±10.67
ENSG00000196505 ENST00000369442 N/A N/A N/A 1.351±0.98 2.538±0.00 2.182±0.00 0.460±0.00 N/A 0.336±0.00 3.585±0.00 N/A 1.023±0.00 0.661±0.12 1.968±0.00
ENST00000369443 1.374±0.00 0.209±0.00 3.625±0.00 0.820±0.74 1.556±0.70 3.589±0.00 0.583±0.00 1.589±1.13 6.716±0.00 4.644±0.00 0.581±0.34 1.362±1.29 0.488±0.12 0.871±0.24
ENST00000464026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491626 N/A N/A N/A N/A N/A 1.860±0.00 N/A 2.901±0.00 N/A N/A 0.659±0.00 2.239±0.00 2.211±0.61 5.761±1.14
ENST00000493555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.826±0.00 1.808±0.95 5.891±1.62
ENST00000494224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198162 ENST00000356554 5.533±0.00 3.312±0.00 1.760±0.00 4.150±0.00 4.697±0.89 2.982±0.62 2.138±0.92 4.720±0.28 4.468±0.15 2.741±0.00 1.667±1.29 3.500±1.04 7.152±2.15 3.572±1.06
ENST00000421535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213262 ENST00000430995 N/A 0.044±0.00 1.058±0.00 N/A 0.196±0.17 0.139±0.00 0.013±0.00 0.332±0.28 N/A 0.141±0.00 N/A 0.096±0.10 N/A 0.087±0.06
ENSG00000226755 ENST00000455691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.08
ENSG00000228217 ENST00000423940 N/A N/A 0.151±0.00 N/A 0.351±0.00 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235202 ENST00000442182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.274±0.14
ENSG00000236866 ENST00000425010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00
ENST00000440801 N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.141±0.00
ENST00000456126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A N/A 0.976±0.72
ENSG00000270719 ENST00000605704 N/A N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271427 ENST00000604156 N/A 0.429±0.00 N/A 0.137±0.00 0.228±0.00 0.050±0.00 0.027±0.00 0.067±0.00 0.059±0.00 N/A N/A 0.205±0.13 0.060±0.01 0.067±0.02
ENSG00000279513 ENST00000623435 0.052±0.00 0.146±0.00 0.126±0.00 0.289±0.13 0.108±0.02 0.096±0.08 0.293±0.28 0.188±0.15 0.162±0.09 0.301±0.25 N/A 0.029±0.01 0.044±0.01 0.121±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008763 ENSMUST00000008907 5.841±4.02 5.016±0.35 3.512±0.59 5.023±2.27 3.144±1.47 7.645±0.78 1.786±0.56 3.495±1.59 2.311±0.94 4.589±1.54 1.549±0.30 7.324±2.49 9.850±2.56 4.668±1.01
ENSMUST00000123442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.019±0.00 N/A 89.026±0.00
ENSMUST00000130066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.314±0.00 47.054±11.83 58.546±0.00
ENSMUST00000133642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146818 N/A 9.216±4.60 N/A N/A N/A 13.434±0.11 N/A N/A N/A N/A N/A 9.129±0.10 N/A N/A
ENSMUSG00000027865 ENSMUST00000029459 6.151±0.72 2.812±0.22 5.560±0.71 7.941±0.16 5.813±1.39 3.469±0.16 2.953±0.32 4.804±0.84 7.076±1.73 5.957±0.41 1.760±0.28 4.470±0.83 10.498±1.22 11.417±0.30
ENSMUST00000106997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044468 ENSMUST00000061455 1.237±0.51 0.587±0.07 0.824±0.01 0.526±0.20 2.692±0.67 3.392±0.35 6.005±4.77 1.961±0.15 20.817±21.06 8.423±1.67 0.227±0.09 7.733±1.72 3.887±1.96 104.276±51.82
ENSMUST00000128107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053957 ENSMUST00000122898 0.090±0.04 0.101±0.08 0.185±0.00 0.041±0.02 0.325±0.12 0.170±0.04 0.063±0.05 0.099±0.06 N/A 0.798±0.06 0.040±0.01 0.506±0.14 0.217±0.23 0.385±0.08
ENSMUSG00000081440 ENSMUST00000121385 0.030±0.00 N/A N/A N/A 0.032±0.00 0.068±0.00 N/A N/A 0.017±0.01 N/A N/A 0.067±0.03 0.027±0.02 0.046±0.02
ENSMUSG00000083842 ENSMUST00000119641 0.299±0.00 N/A 0.074±0.00 N/A N/A 0.748±0.23 N/A N/A N/A 0.345±0.04 N/A N/A N/A N/A
ENSMUSG00000086923 ENSMUST00000147951 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 0.024±0.01 N/A N/A N/A 0.010±0.00 10.543±7.28
ENSMUST00000152827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.676±5.57

Loading