C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455840 RP3-481F12.1-001 ENSG00000231005 9606 + 20:57328546-57328696 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0006IN CIL_0006IN_0002 CGP 20:57168748-57343994

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 8e-31 135
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 8e-31 135
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 3e-30 134
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 1e-28 128
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 5e-28 126
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 5e-28 126
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 6e-27 122
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 4e-24 113
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 1e-23 111
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 2e-22 108
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 2e-21 104
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 1e-19 99
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 1e-18 95

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