C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457490 RPL36AP13-001 ENSG00000233747 9606 + 2:24334512-24335152 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000457490
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000457490 0.176±0.00 0.092±0.00 0.046±0.00 0.045±0.00 0.170±0.00 0.245±0.03 1.307±0.00 0.045±0.00 0.290±0.00 0.209±0.08 0.189±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000024 CIL_000024_0002 CGP 2:24175069-24360714

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 385
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 381
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 374
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 357
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 296
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 189

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