C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457800 DDX42-202 ENSG00000198231 9606 + 17:63792531-63819246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457800
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457800 18.588±0.00 27.391±0.00 24.292±0.00 20.956±0.00 13.987±0.00 1.900±0.00 15.674±0.00 6.212±0.00 11.653±0.00 7.529±0.00 23.573±1.08 9.650±0.00 28.677±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021046 Ddx42-001 protein_coding Mus_musculus 0 3360
ENSDART00000127297 ddx42-001 protein_coding Danio_rerio 0 894
ENSMUST00000118480 Gm14745-001 processed_pseudogene Mus_musculus 0 861
ENSDART00000076209 ddx42-201 protein_coding Danio_rerio 0 850
ENSMUST00000152860 Ddx42-002 processed_transcript Mus_musculus 0 350
ENSDART00000151504 ddx42-002 retained_intron Danio_rerio 0.00000003 66

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