C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: regulatory factor X, 3 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458034 RFX3-008 ENSG00000080298 9606 - 9:3257002-3270738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000458034
Transcript ID Testis
ENST00000458034 16.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NH CIL_0000NH_0001 CGP 9:2720469-3526004
CIL_0009AI CIL_0009AI_0001 VISTA 9:3101031-3702562

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165566 Rfx3-201 protein_coding Mus_musculus 0 942
ENSMUST00000172907 Rfx3-004 protein_coding Mus_musculus 0 942
ENSMUST00000172498 Rfx3-006 processed_transcript Mus_musculus 0 942
ENSMUST00000174850 Rfx3-001 protein_coding Mus_musculus 0 942
ENSMUST00000046898 Rfx3-003 protein_coding Mus_musculus 0 942
ENSMUST00000173863 Rfx3-005 nonsense_mediated_decay Mus_musculus 0 658
ENSMUST00000173161 Rfx3-002 retained_intron Mus_musculus 0 472

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