C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 3 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173863 Rfx3-005 ENSMUSG00000040929 10090 - 19:27768455-27900895 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryTestisENSMUST00000173863
Transcript ID Colon Liver Ovary Testis
ENSMUST00000173863 0.421±0.00 0.276±0.00 2.552±0.39 4.790±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NH CIL_0000NH_0002 CGP 19:27388702-28011166
CIL_0009AI CIL_0009AI_0002 VISTA 19:27604248-28205597
CIL_0000F0 CIL_0000F0_0002 CGP 19:27761721-28680077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302303 RFX3-201 protein_coding Homo_sapiens 0 965
ENST00000358730 RFX3-005 protein_coding Homo_sapiens 0 965
ENST00000382004 RFX3-006 protein_coding Homo_sapiens 0 1190
ENST00000420720 RFX3-010 protein_coding Homo_sapiens 0 527
ENST00000442560 RFX3-009 protein_coding Homo_sapiens 0 527
ENST00000449190 RFX3-004 protein_coding Homo_sapiens 0 564
ENST00000449234 RFX3-007 protein_coding Homo_sapiens 0 472
ENST00000451859 RFX3-002 protein_coding Homo_sapiens 0 793
ENST00000457373 RFX3-003 protein_coding Homo_sapiens 0 654
ENST00000458034 RFX3-008 protein_coding Homo_sapiens 0 658
ENST00000617270 RFX3-202 protein_coding Homo_sapiens 0 1190

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