C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460680 BAP1-001 ENSG00000163930 9606 - 3:52401013-52410350 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000460680
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000460680 11.071±0.00 9.374±0.00 12.750±8.63 6.759±5.58 4.304±3.54 0.558±0.00 6.391±0.00 2.226±0.44 4.977±2.74 7.105±6.26 3.943±0.00 40.410±5.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IMP regulation of cell growth
GO:0003682 IDA chromatin binding
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IEA:IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006464 NAS cellular protein modification process
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008233 NAS peptidase activity
GO:0008285 TAS negative regulation of cell proliferation
GO:0016579 IDA protein deubiquitination
GO:0035517 IDA PR-DUB complex
GO:0035520 IDA monoubiquitinated protein deubiquitination
GO:0035522 IDA monoubiquitinated histone H2A deubiquitination
GO:0051726 IMP regulation of cell cycle
GO:0071108 IMP protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022458 Bap1-001 protein_coding Mus_musculus 0 2918
ENSMUST00000190788 Bap1-002 retained_intron Mus_musculus 0 1576
ENSMUST00000189834 Bap1-003 retained_intron Mus_musculus 0 582
ENSMUST00000188453 Bap1-005 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000185987 Bap1-006 retained_intron Mus_musculus 0 566
ENSMUST00000187156 Bap1-007 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000185700 Bap1-008 retained_intron Mus_musculus 0 518
ENSMUST00000188714 Bap1-004 retained_intron Mus_musculus 0 213

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