C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S8 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462935 RPS8P3-001 ENSG00000215457 9606 - 18:51845007-51845628 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyOvaryTestisENST00000462935
Transcript ID Adipose Brain Breast Colon Heart Kidney Ovary Testis
ENST00000462935 0.026±0.00 0.090±0.00 0.058±0.00 0.081±0.00 0.026±0.00 0.029±0.00 0.128±0.00 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008U4 CIL_0008U4_0001 VISTA 18:51453004-52055110
CIL_0008ER CIL_0008ER_0001 VISTA 18:51746215-52348141

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102696 Rps8-001 protein_coding Mus_musculus 0 606
ENSMUST00000140687 Gm15501-001 transcribed_processed_pseudogene Mus_musculus 0 595
ENSMUST00000133910 Gm15501-002 processed_transcript Mus_musculus 0 595
ENSMUST00000180940 Gm11353-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000118709 Rps8-ps2-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000121572 Gm14438-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000122418 Gm14323-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000085711 Gm5121-201 processed_pseudogene Mus_musculus 0 573
ENSMUST00000120833 Gm14414-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000118252 Gm5687-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000161442 Gm16585-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000144051 Rps8-007 retained_intron Mus_musculus 0 383
ENSMUST00000141219 Rps8-006 retained_intron Mus_musculus 5.99756e-43 178
ENSMUST00000140226 Rps8-002 retained_intron Mus_musculus 6e-23 111

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