C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464256 PAXBP1-007 ENSG00000159086 9606 - 21:32759402-32771792 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryENST00000464256
Transcript ID Bladder Brain Kidney Liver Ovary
ENST00000464256 4.181±0.00 1.834±0.00 1.511±0.00 1.333±0.00 7.669±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858
CIL_0003TV CIL_0003TV_0001 CGP 21:32733899-32813743

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118522 Paxbp1-001 protein_coding Mus_musculus 0 1400
ENSMUST00000127002 Paxbp1-007 processed_transcript Mus_musculus 0 1393
ENSMUST00000023698 Paxbp1-002 nonsense_mediated_decay Mus_musculus 0 1186
ENSMUST00000124653 Paxbp1-004 retained_intron Mus_musculus 0 531

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