C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118522 Paxbp1-001 ENSMUSG00000022974 10090 - 16:91014037-91044543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118522 3.885±0.12 5.403±1.72 3.775±0.00 13.603±0.00 4.849±1.63 5.943±1.64 2.131±0.41 2.469±0.47 5.477±5.08 6.765±1.49 1.014±0.19 8.264±3.15 5.483±0.63 5.586±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003TV CIL_0003TV_0002 CGP 16:91014037-91095122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 IEA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008134 IPI transcription factor binding
GO:0014842 IMP regulation of satellite cell proliferation
GO:0031062 IDA positive regulation of histone methylation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:2000288 IMP positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290178 PAXBP1-005 protein_coding Homo_sapiens 0 2964
ENST00000331923 PAXBP1-001 protein_coding Homo_sapiens 0 3799
ENST00000421049 PAXBP1-008 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000443785 PAXBP1-006 nonsense_mediated_decay Homo_sapiens 0 3557
ENST00000449315 PAXBP1P1-001 processed_pseudogene Homo_sapiens 0 209
ENST00000464256 PAXBP1-007 retained_intron Homo_sapiens 0 1400
ENST00000466846 PAXBP1-002 retained_intron Homo_sapiens 0 2012
ENST00000472588 PAXBP1-004 processed_transcript Homo_sapiens 0 1712
ENST00000497873 PAXBP1-003 retained_intron Homo_sapiens 0 1679
ENST00000573680 PAXBP1-005 protein_coding Homo_sapiens 0 614
ENST00000574159 PAXBP1-001 protein_coding Homo_sapiens 0 621
ENST00000575419 PAXBP1-007 retained_intron Homo_sapiens 0 621
ENST00000575821 PAXBP1-004 processed_transcript Homo_sapiens 0 614
ENST00000611190 PAXBP1-006 processed_transcript Homo_sapiens 0 621

Loading