C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidylprolyl isomerase A (cyclophilin A) pseudogene 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464473 PPIAP21-001 ENSG00000226038 9606 + 20:43230760-43231260 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyMuscleOvaryTestisENST00000464473
Transcript ID Adrenal Brain Breast Kidney Muscle Ovary Testis
ENST00000464473 0.063±0.00 0.335±0.00 0.064±0.00 0.032±0.00 0.027±0.00 0.061±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E4 CIL_0004E4_0001 CGP 20:42072752-43464247

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 586
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 586
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 562
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 545
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 545
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 525
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 512
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 276
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 257
ENSMUST00000117436 Gm13400-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 207
ENSMUST00000121356 Gm6079-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 7e-27 124

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