C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465089 PBX1-005 ENSG00000185630 9606 + 1:164812728-164850357 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverLungOvaryENST00000465089
Transcript ID Bladder Breast Heart Kidney Liver Lung Ovary
ENST00000465089 1.233±0.00 1.592±0.00 0.466±0.00 0.195±0.00 3.435±0.00 1.201±0.00 1.376±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M6 CIL_0007M6_0001 UCNEbase 1:164054328-164712505
CIL_0007US CIL_0007US_0001 VISTA 1:164334904-164936237
CIL_0008NA CIL_0008NA_0001 VISTA 1:164350801-164951927
CIL_0009AB CIL_0009AB_0001 VISTA 1:164368338-164969800
CIL_00096W CIL_00096W_0001 VISTA 1:164399355-165000586
CIL_00089R CIL_00089R_0001 VISTA 1:164403550-165004969
CIL_0008FU CIL_0008FU_0001 VISTA 1:164431022-165032285
CIL_00094F CIL_00094F_0001 VISTA 1:164536270-165137557

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0 1301
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0 872
ENSMUST00000097471 Pbx1-009 processed_transcript Mus_musculus 0 675
ENSMUST00000064438 Pbx1-005 protein_coding Mus_musculus 0 339
ENSDART00000129503 pbx1b-203 protein_coding Danio_rerio 0 302
ENSDART00000125538 pbx1b-202 protein_coding Danio_rerio 0 302
ENSDART00000122028 pbx1b-201 protein_coding Danio_rerio 0 215
ENSMUST00000188912 Pbx1-001 protein_coding Mus_musculus 9e-38 165
ENSMUST00000072863 Pbx1-201 protein_coding Mus_musculus 0.000000000000006 90

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