C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468209 NSMCE4A-012 ENSG00000107672 9606 - 10:121959365-121974285 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungOvaryTestisENST00000468209
Transcript ID Brain Breast Colon Liver Lung Ovary Testis
ENST00000468209 1.115±0.10 3.208±0.00 3.009±0.00 1.685±0.00 1.641±0.00 6.048±4.10 2.308±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095T CIL_00095T_0001 VISTA 10:121499915-122101503
CIL_0001BD CIL_0001BD_0001 CGP 10:121740421-121975217
CIL_00047F CIL_00047F_0002 CGP 10:121957088-122254545

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160289 Nsmce4a-001 protein_coding Mus_musculus 0 1040
ENSMUST00000159694 Nsmce4a-006 protein_coding Mus_musculus 0 867
ENSMUST00000161076 Nsmce4a-003 nonsense_mediated_decay Mus_musculus 0 695
ENSMUST00000161470 Nsmce4a-004 retained_intron Mus_musculus 0 368
ENSMUST00000162510 Nsmce4a-005 retained_intron Mus_musculus 1.00053e-42 178

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