C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468844 RPL39-002 ENSG00000198918 9606 - X:119786506-119791595 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000176 CIL_000176_0002 CGP X:119758613-119791643
CIL_000175 CIL_000175_0002 CGP X:119786504-119852998

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 228
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 228
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 204
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 204
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 0 191
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 2.8026e-45 187
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 4.06377e-44 183
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 6.99949e-42 176
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 3.00004e-41 174
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 2e-38 165
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 6e-38 163
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 6e-38 163
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 4e-34 150

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