C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caspase 2, apoptosis-related cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472067 CASP2-004 ENSG00000106144 9606 + 7:143294604-143306569 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryENST00000472067
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENST00000472067 0.269±0.00 0.265±0.00 0.765±0.00 0.558±0.00 0.121±0.00 0.337±0.00 0.739±0.00 0.163±0.00 0.724±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VH CIL_0006VH_0001 CGP 7:143279957-143307696
CIL_0006VM CIL_0006VM_0001 CGP 7:143288215-143352083

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156829 Casp2-003 nonsense_mediated_decay Mus_musculus 0 510
ENSMUST00000031895 Casp2-001 protein_coding Mus_musculus 0 508
ENSMUST00000141669 Casp2-006 processed_transcript Mus_musculus 0 228
ENSMUST00000144821 Casp2-007 processed_transcript Mus_musculus 0 226
ENSMUST00000132398 Casp2-008 retained_intron Mus_musculus 1e-23 117
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.00003 57

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