C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caspase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156829 Casp2-003 ENSMUSG00000029863 10090 + 6:42265120-42280492 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleENSMUST00000156829
Transcript ID Brain Liver Muscle
ENSMUST00000156829 0.990±0.00 0.412±0.00 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VH CIL_0006VH_0002 CGP 6:42261970-42282508
CIL_0006VM CIL_0006VM_0002 CGP 6:42264985-42315756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006508 RCA proteolysis
GO:0008233 RCA peptidase activity
GO:0008630 IBA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0035234 IGI ectopic germ cell programmed cell death
GO:0043065 ISA positive regulation of apoptotic process
GO:0043066 ISA negative regulation of apoptotic process
GO:0097153 IDA cysteine-type endopeptidase activity involved in apoptotic process
GO:0097190 IDA apoptotic signaling pathway
GO:0097192 IMP extrinsic apoptotic signaling pathway in absence of ligand
GO:2001235 IGI positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310447 CASP2-001 protein_coding Homo_sapiens 0 1074
ENST00000350623 CASP2-003 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000392925 CASP2-005 protein_coding Homo_sapiens 0 488
ENST00000472067 CASP2-004 retained_intron Homo_sapiens 0 510
ENST00000481483 CASP2-006 retained_intron Homo_sapiens 0 422
ENST00000493642 CASP2-002 processed_transcript Homo_sapiens 0 1555
ENST00000619992 CASP2-201 protein_coding Homo_sapiens 0 566

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