C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006VH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178826-ENSG00000106144 CGP 9606 7:143279957-143307696
GeneTranscriptPositionBiotype
ENSG00000106144 (CASP2)
caspase 2, apoptosis-related cysteine peptidase 		ENST00000310447 (CASP2-001) 143288215-143307696 protein_coding
ENST00000350623 (CASP2-003) 143288451-143305071 nonsense_mediated_decay
ENST00000392925 (CASP2-005) 143288395-143293226 protein_coding
ENST00000472067 (CASP2-004) 143294604-143306569 retained_intron
ENST00000481483 (CASP2-006) 143291618-143294481 retained_intron
ENST00000493642 (CASP2-002) 143289588-143305822 processed_transcript
ENST00000619992 (CASP2-201) 143288215-143307695 protein_coding
ENSG00000178826 (TMEM139)
transmembrane protein 139 		ENST00000359333 (TMEM139-001) 143284950-143288048 protein_coding
ENST00000409102 (TMEM139-006) 143279957-143287296 protein_coding
ENST00000409244 (TMEM139-003) 143284951-143287296 protein_coding
ENST00000409541 (TMEM139-005) 143284954-143288047 protein_coding
ENST00000410004 (TMEM139-002) 143284957-143288048 protein_coding
ENST00000471161 (TMEM139-004) 143285347-143288048 processed_transcript
ENST00000480421 (TMEM139-008) 143284951-143286862 processed_transcript
ENST00000482420 (TMEM139-009) 143284969-143286456 processed_transcript
ENST00000487419 (TMEM139-007) 143284947-143287070 processed_transcript
ENSG00000231840 (AC073342.12)
 ENST00000427392 (AC073342.12-001) 143255264-143286663 antisense
ENST00000446192 (AC073342.12-002) 143285720-143287380 antisense
ENSG00000239419 (RN7SL535P)
RNA, 7SL, cytoplasmic 535, pseudogene 		ENST00000479087 (RN7SL535P-201) 143290615-143290910 misc_RNA
ENSG00000240322 (RN7SL481P)
RNA, 7SL, cytoplasmic 481, pseudogene 		ENST00000477764 (RN7SL481P-201) 143298516-143298814 misc_RNA
CIL_0006VH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071506-ENSMUSG00000029863 CGP 10090 6:42261970-42282508
GeneTranscriptPositionBiotype
ENSMUSG00000029863 (Casp2)
caspase 2 		ENSMUST00000031895 (Casp2-001) 42264985-42282508 protein_coding
ENSMUST00000132246 (Casp2-005) 42267391-42268030 processed_transcript
ENSMUST00000132398 (Casp2-008) 42276487-42280533 retained_intron
ENSMUST00000139930 (Casp2-004) 42265056-42269122 retained_intron
ENSMUST00000141669 (Casp2-006) 42268010-42269607 processed_transcript
ENSMUST00000141727 (Casp2-010) 42279781-42280641 processed_transcript
ENSMUST00000144821 (Casp2-007) 42269285-42279897 processed_transcript
ENSMUST00000152893 (Casp2-009) 42279637-42280490 processed_transcript
ENSMUST00000156829 (Casp2-003) 42265120-42280492 nonsense_mediated_decay
ENSMUSG00000071506 (Tmem139)
transmembrane protein 139 		ENSMUST00000095987 (Tmem139-201) 42261970-42264555 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VH_0001ENSG00000106144ENST00000310447ENST00000350623ENST00000392925ENST00000472067ENST00000481483ENST00000493642ENST00000619992ENSG00000178826ENST00000359333ENST00000409102ENST00000409244ENST00000409541ENST00000410004ENST00000471161ENST00000480421ENST00000482420ENST00000487419ENSG00000231840ENST00000427392ENST00000446192ENSG00000239419ENST00000479087ENSG00000240322ENST00000477764CIL_0006VH_0002ENSMUSG00000029863ENSMUST00000031895ENSMUST00000132246ENSMUST00000132398ENSMUST00000139930ENSMUST00000141669ENSMUST00000141727ENSMUST00000144821ENSMUST00000152893ENSMUST00000156829ENSMUSG00000071506ENSMUST00000095987
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VH_0001ENSG00000106144ENST00000310447ENST00000350623ENST00000392925ENST00000472067ENST00000493642ENST00000619992ENSG00000178826ENST00000359333ENST00000409102ENST00000409244ENST00000409541ENST00000471161ENST00000480421ENST00000482420ENST00000487419ENSG00000231840ENST00000427392ENSG00000239419ENST00000479087ENSG00000240322ENST00000477764CIL_0006VH_0002ENSMUSG00000029863ENSMUST00000031895ENSMUST00000132246ENSMUST00000156829ENSMUSG00000071506ENSMUST00000095987
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106144 ENST00000310447 3.236±0.00 3.934±0.00 0.576±0.00 N/A 1.919±0.00 2.410±0.29 1.029±0.00 3.879±0.00 0.562±0.00 2.547±1.24 0.548±0.00 6.152±4.04 5.998±2.33 5.018±0.45
ENST00000350623 N/A N/A N/A 0.514±0.00 1.626±0.00 N/A N/A N/A 0.935±0.00 N/A 0.947±0.00 1.959±0.00 N/A N/A
ENST00000392925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.144±0.00
ENST00000472067 N/A N/A 0.269±0.00 0.265±0.00 0.765±0.00 0.558±0.00 N/A 0.121±0.00 0.337±0.00 0.739±0.00 0.163±0.00 0.724±0.00 N/A N/A
ENST00000481483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493642 N/A N/A 0.634±0.00 0.235±0.00 N/A 1.893±0.00 N/A N/A N/A 0.872±0.00 N/A N/A N/A 1.283±0.00
ENST00000619992 1.564±0.00 4.869±0.00 0.211±0.00 0.970±0.80 2.134±0.74 1.019±0.00 0.495±0.25 0.598±0.00 1.245±0.00 0.877±0.00 0.180±0.00 2.068±0.51 1.615±0.31 N/A
ENSG00000178826 ENST00000359333 N/A N/A 1.178±0.00 0.363±0.00 0.991±0.00 0.376±0.00 N/A 3.360±0.00 0.734±0.00 N/A N/A 0.440±0.26 N/A 0.361±0.00
ENST00000409102 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.703±0.00 N/A 1.709±0.74 6.740±0.00 0.640±0.00
ENST00000409244 N/A N/A 5.563±0.00 N/A 0.792±0.00 2.990±0.00 1.103±0.00 2.441±0.59 0.662±0.41 0.784±0.00 0.142±0.00 1.228±0.00 6.837±2.95 0.793±0.00
ENST00000409541 N/A N/A N/A 0.647±0.00 1.708±0.00 N/A 0.528±0.00 1.715±0.00 N/A N/A N/A N/A N/A 0.310±0.01
ENST00000410004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471161 0.030±0.00 N/A N/A N/A 0.744±0.22 N/A 0.596±0.00 2.689±0.00 N/A 0.787±0.00 N/A 0.750±0.00 3.841±1.66 N/A
ENST00000480421 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A N/A N/A N/A N/A N/A
ENST00000482420 N/A 0.105±0.00 N/A N/A N/A 1.783±0.00 0.918±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000487419 0.107±0.00 N/A N/A 0.658±0.16 2.396±0.00 N/A 1.993±0.00 N/A N/A 0.997±0.00 N/A N/A N/A N/A
ENSG00000231840 ENST00000427392 N/A N/A N/A 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239419 ENST00000479087 0.599±0.00 1.902±0.00 N/A 0.182±0.04 0.198±0.00 0.060±0.00 0.366±0.25 0.451±0.00 2.296±0.00 0.061±0.00 N/A 0.285±0.03 N/A N/A
ENSG00000240322 ENST00000477764 0.108±0.00 0.847±0.00 0.968±0.00 1.317±0.00 0.231±0.00 0.941±0.00 0.333±0.17 N/A N/A 0.218±0.05 N/A 1.065±0.54 N/A 0.160±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029863 ENSMUST00000031895 12.234±4.98 7.537±1.01 10.480±0.34 17.441±12.40 12.353±3.24 17.869±2.85 2.459±0.33 5.215±1.42 9.387±8.96 16.613±0.70 0.787±0.38 19.478±8.06 5.776±3.56 1.897±0.86
ENSMUST00000132246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.614±0.00 N/A
ENSMUST00000132398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156829 N/A N/A N/A 0.990±0.00 N/A N/A N/A N/A 0.412±0.00 N/A 0.582±0.00 N/A N/A N/A
ENSMUSG00000071506 ENSMUST00000095987 0.353±0.35 0.204±0.12 1.210±0.25 0.048±0.00 0.830±0.30 23.488±2.74 0.109±0.06 13.734±3.26 0.183±0.05 3.817±0.51 0.122±0.07 0.990±0.39 2.263±0.91 0.225±0.12

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